Chemically and Site-specifically Ubiquitylated Linker Histone H1 Facilitates RNF168-Mediated Nucleosomal H2A Ubiquitylation
Shi, Q., Deng, Z.H., Zhang, L.Y., Tong, Z.B., Chu, G.-C., Ai, H.S., Liu, L.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H1.0 | A [auth I] | 194 | Homo sapiens | Mutation(s): 0  Gene Names: H1-0, H1F0, H1FV | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P07305 (Homo sapiens) Explore P07305  Go to UniProtKB:  P07305 | |||||
PHAROS:  P07305 GTEx:  ENSG00000189060  | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P07305 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H3.2 | B [auth A], F [auth E] | 135 | Homo sapiens | Mutation(s): 0  Gene Names: H3C15, HIST2H3A, H3C14, H3F2, H3FM, HIST2H3C, H3C13, HIST2H3D | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q71DI3 (Homo sapiens) Explore Q71DI3  Go to UniProtKB:  Q71DI3 | |||||
PHAROS:  Q71DI3 GTEx:  ENSG00000183598  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q71DI3 | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H4 | C [auth B], G [auth F] | 102 | Homo sapiens | Mutation(s): 0  Gene Names:  H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, H4/G... | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62805 (Homo sapiens) Explore P62805  Go to UniProtKB:  P62805 | |||||
PHAROS:  P62805 GTEx:  ENSG00000274618  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62805 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2A type 1-B/E | D [auth C], H [auth G] | 129 | Homo sapiens | Mutation(s): 0  Gene Names: H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04908 (Homo sapiens) Explore P04908  Go to UniProtKB:  P04908 | |||||
PHAROS:  P04908 GTEx:  ENSG00000277075  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04908 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2B type 1-K | E [auth D], I [auth H] | 125 | Homo sapiens | Mutation(s): 0  Gene Names: H2BC12, H2BFT, HIRIP1, HIST1H2BK | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60814 (Homo sapiens) Explore O60814  Go to UniProtKB:  O60814 | |||||
PHAROS:  O60814 GTEx:  ENSG00000197903  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60814 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin-conjugating enzyme E2 D3 | J [auth K] | 147 | Homo sapiens | Mutation(s): 0  Gene Names: UBE2D3, UBC5C, UBCH5C EC: 2.3.2.23 (PDB Primary Data), 2.3.2.24 (PDB Primary Data) | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61077 (Homo sapiens) Explore P61077  Go to UniProtKB:  P61077 | |||||
PHAROS:  P61077 GTEx:  ENSG00000109332  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61077 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase RNF168 | K [auth L] | 193 | Homo sapiens | Mutation(s): 0  Gene Names: RNF168 EC: 2.3.2.27 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8IYW5 (Homo sapiens) Explore Q8IYW5  Go to UniProtKB:  Q8IYW5 | |||||
PHAROS:  Q8IYW5 GTEx:  ENSG00000163961  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8IYW5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | L [auth M] | 75 | Homo sapiens | Mutation(s): 0  Gene Names: RPS27A, UBA80, UBCEP1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62979 (Homo sapiens) Explore P62979  Go to UniProtKB:  P62979 | |||||
PHAROS:  P62979 GTEx:  ENSG00000143947  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62979 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (171-MER) | M [auth J] | 171 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (171-MER) | 171 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | O [auth L], P [auth L] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China (NSFC) | China | 22137005, 92253302, 22227810 |