9FGQ

Structure of human APC3loop 375-381 bound to the NCP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Spatial control of the APC/C ensures the rapid degradation of cyclin B1.

Cirillo, L.Young, R.Veerapathiran, S.Roberti, A.Martin, M.Abubacar, A.Perosa, C.Coates, C.Muhammad, R.Roumeliotis, T.I.Choudhary, J.S.Alfieri, C.Pines, J.

(2024) EMBO J 

  • DOI: https://doi.org/10.1038/s44318-024-00194-2
  • Primary Citation of Related Structures:  
    9FGQ, 9FH9

  • PubMed Abstract: 

    The proper control of mitosis depends on the ubiquitin-mediated degradation of the right mitotic regulator at the right time. This is effected by the Anaphase Promoting Complex/Cyclosome (APC/C) ubiquitin ligase that is regulated by the Spindle Assembly Checkpoint (SAC). The SAC prevents the APC/C from recognising Cyclin B1, the essential anaphase and cytokinesis inhibitor, until all chromosomes are attached to the spindle. Once chromosomes are attached, Cyclin B1 is rapidly degraded to enable chromosome segregation and cytokinesis. We have a good understanding of how the SAC inhibits the APC/C, but relatively little is known about how the APC/C recognises Cyclin B1 as soon as the SAC is turned off. Here, by combining live-cell imaging, in vitro reconstitution biochemistry, and structural analysis by cryo-electron microscopy, we provide evidence that the rapid recognition of Cyclin B1 in metaphase requires spatial regulation of the APC/C. Using fluorescence cross-correlation spectroscopy, we find that Cyclin B1 and the APC/C primarily interact at the mitotic apparatus. We show that this is because Cyclin B1, like the APC/C, binds to nucleosomes, and identify an 'arginine-anchor' in the N-terminus as necessary and sufficient for binding to the nucleosome. Mutating the arginine anchor on Cyclin B1 reduces its interaction with the APC/C and delays its degradation: cells with the mutant, non-nucleosome-binding Cyclin B1 become aneuploid, demonstrating the physiological relevance of our findings. Together, our data demonstrate that mitotic chromosomes promote the efficient interaction between Cyclin B1 and the APC/C to ensure the timely degradation of Cyclin B1 and genomic stability.


  • Organizational Affiliation

    The Institute of Cancer Research Chester Beatty Laboratories, 237 Fulham Road, London, SW3 6JB, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division cycle protein 27 homologA [auth K],
B [auth L]
317Homo sapiensMutation(s): 0 
Gene Names: CDC27ANAPC3D0S1430ED17S978E
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Find proteins for P30260 (Homo sapiens)
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Go to UniProtKB:  P30260
PHAROS:  P30260
GTEx:  ENSG00000004897 
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UniProt GroupP30260
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3.1C [auth A],
G [auth E]
136Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P68431 (Homo sapiens)
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PHAROS:  P68431
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UniProt GroupP68431
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4D [auth B],
H [auth F]
103Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P62805 (Homo sapiens)
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PHAROS:  P62805
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UniProt GroupP62805
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2A type 2-AE [auth C],
I [auth G]
130Homo sapiensMutation(s): 0 
Gene Names: H2AC18H2AFOHIST2H2AAHIST2H2AA3H2AC19HIST2H2AA4
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Find proteins for Q6FI13 (Homo sapiens)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2B type 1-BF [auth D],
J [auth H]
273Homo sapiensMutation(s): 0 
Gene Names: H2BC3H2BFFHIST1H2BB
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Find proteins for P33778 (Homo sapiens)
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GTEx:  ENSG00000276410 
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Entity ID: 6
MoleculeChains LengthOrganismImage
DNA (132-MER)K [auth I]211Homo sapiens
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Entity ID: 7
MoleculeChains LengthOrganismImage
DNA (131-MER)L [auth J]211Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION5.0-beta-latest

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--
The Institute of Cancer Research (ICR)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-24
    Type: Initial release
  • Version 1.1: 2024-08-28
    Changes: Data collection, Database references