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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Petersen, J."

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Search Summary

This query matches 79 Structures.

Refinements

Structure Determination Methodology

experimental (79)

Scientific Name of Source Organism

	Homo sapiens (58)
	Mus musculus (16)
	Triticum aestivum (12)
	Streptococcus pneumoniae (4)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Influenza B virus (2)
	Pseudomonas fluorescens (2)
	Anemonia sulcata (1)
	Entacmaea quadricolor (1)
	Human betaherpesvirus 5 (1)

More...

Taxonomy

	Eukaryota (77)
	Bacteria (7)
	Eukaryota (eukaryotes) (6)
	Riboviria (6)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (79)

Polymer Entity Type

Protein (79)

Refinement Resolution (Å)

	1.5 - 2.0 (23)
	2.0 - 2.5 (19)
	2.5 - 3.0 (22)
	3.0 - 3.5 (14)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (8)
	2010 - 2014 (10)
	2015 - 2019 (33)
	2020 - 2024 (26)

Enzyme Classification Name

	Transferases (23)
	Hydrolases (12)
	Isomerases (3)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (62)
	Cyclic (15)
	Dihedral (2)

SCOP Classification

	All beta proteins (25)
	Alpha and beta proteins (a+b) (26)
	All alpha proteins (8)
	Alpha and beta proteins (a/b) (4)
	Membrane and cell surface proteins and peptides (1)
	Artifacts (4)

AllSelected

1 to 25 of 79 Structures

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1UIS \| pdb_00001uis	Download File View File

The 2.0 crystal structure of eqFP611, a far-red fluorescent protein from the sea anemone Entacmaea quadricolor

Petersen, J., Wilmann, P.G., Beddoe, T., Oakley, A.J., Devenish, R.J., Prescott, M., Rossjohn, J.

(2003) J Biological Chem 278: 44626-44631

Released	2003-10-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Entacmaea quadricolor
Macromolecule	red fluorescent protein FP611 (protein)
Unique Ligands	ACY, CA

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1XQM \| pdb_00001xqm	Download File View File

Variations on the GFP chromophore scaffold: A fragmented 5-membered heterocycle revealed in the 2.1A crystal structure of a non-fluorescent chromoprotein

Wilmann, P.G., Petersen, J., Devenish, R.J., Prescott, M., Rossjohn, J.

(2005) J Biological Chem 280: 2401-2404

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Anemonia sulcata
Macromolecule	kindling fluorescent protein (protein)
Unique Ligands	ACY

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1YZW \| pdb_00001yzw	Download File View File

The 2.1A Crystal Structure of the Far-red Fluorescent Protein HcRed: Inherent Conformational Flexibility of the Chromophore

Wilmann, P.G., Petersen, J., Pettikiriarachchi, A., Buckle, A.M., Devenish, R.J., Prescott, M., Rossjohn, J.

(2005) J Mol Biology 349: 223-237

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Radianthus crispa
Macromolecule	GFP-like non-fluorescent chromoprotein (protein)
Unique Ligands	PEG

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2XYA \| pdb_00002xya	Download File View File

Non-covalent inhibtors of rhinovirus 3C protease.

Petersen, J., Edman, K., Edfeldt, F., Johansson, C.

(2011) Bioorg Med Chem Lett 21: 777

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human rhinovirus sp.
Macromolecule	PICORNAIN 3C (protein)
Unique Ligands	7L4

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2Y6C \| pdb_00002y6c	Download File View File

The Discovery of MMP7 inhibitors Exploiting a Novel Selectivity Trigger

Edman, K., Furber, M., Hemsley, P., Johansson, C., Pairaudeau, G., Petersen, J., Stocks, M., Tervo, A., Ward, A., Wells, E., Wissler, L.

(2011) ChemMedChem 6: 769

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	MATRILYSIN (protein)
Unique Ligands	CA, SO4, TQI, ZN

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2Y6D \| pdb_00002y6d	Download File View File

The Discovery of MMP7 Inhibitors Exploiting a Novel Selectivity Trigger

Edman, K., Furber, M., Hemsley, P., Johansson, C., Pairaudeau, G., Petersen, J., Stocks, M., Tervo, A., Ward, A., Wells, E., Wissler, L.

(2011) ChemMedChem 6: 769

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	MATRILYSIN (protein)
Unique Ligands	CA, SO4, TQJ, ZN

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3B8E \| pdb_00003b8e	Download File View File

Crystal structure of the sodium-potassium pump

Morth, J.P., Pedersen, P.B., Toustrup-Jensen, M.S., Soerensen, T.L.M., Petersen, J., Andersen, J.P., Vilsen, B., Nissen, P.

(2007) Nature 450: 1043-1049

Released	2007-12-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sus scrofa
Macromolecule	Na+/K+ ATPase gamma subunit transcript variant a (protein) Sodium/potassium-transporting ATPase subunit alpha-1 (protein) Sodium/potassium-transporting ATPase subunit beta-1 (protein)
Unique Ligands	MF4, MG, PC1, RB

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3FQN \| pdb_00003fqn	Download File View File

Phosphorylation of self-peptides alters Human Leukocyte Antigen Class I-restricted antigen presentation and generates tumor specific epitopes

Petersen, J., Rossjohn, J.

(2009) Proc Natl Acad Sci U S A 106: 2776-2781

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) peptide 30-39 from beta-Catenin: YLDSGIHSGA (protein)
Unique Ligands	CD, GOL, MG

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3FQR \| pdb_00003fqr	Download File View File

Phosphorylation of self-peptides alters Human Leukocyte Antigen Class I-restricted antigen presentation and generates tumor specific epitopes

Petersen, J., Rossjohn, J.

(2009) Proc Natl Acad Sci U S A 106: 2776-2781

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) phospho-peptide 30-39 from beta-Catenin: YLD(Sep)GIHSGA (protein)
Unique Ligands	CD, GOL, MG

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3FQT \| pdb_00003fqt	Download File View File

Phosphorylation of self-peptides alters Human Leukocyte Antigen Class I-restricted antigen presentation and generates tumor specific epitopes

Petersen, J., Rossjohn, J.

(2009) Proc Natl Acad Sci U S A 106: 2776-2781

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) peptide 38-46 from cell division cycle 25b (CDC25b): GLLGSPVRA (protein)
Unique Ligands	CD, GOL, MG

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3FQU \| pdb_00003fqu	Download File View File

Phosphorylation of self-peptides alters Human Leukocyte Antigen Class I-restricted antigen presentation and generates tumor specific epitopes

Petersen, J., Rossjohn, J.

(2009) Proc Natl Acad Sci U S A 106: 2776-2781

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) phospho-peptide 38-46 from cell division cycle 25b (CDC25b): GLLG(Sep)PVRA (protein)
Unique Ligands	CD, GOL, MG

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3FQW \| pdb_00003fqw	Download File View File

Phosphorylation of self-peptides alters Human Leukocyte Antigen Class I-restricted antigen presentation and generates tumor specific epitopes

Petersen, J., Rossjohn, J.

(2009) Proc Natl Acad Sci U S A 106: 2776-2781

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.927 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) peptide 1097-1105 from insulin receptor substrate 2 (IRS2): RVASPTSGV (protein)
Unique Ligands	CD, CO

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3FQX \| pdb_00003fqx	Download File View File

Phosphorylation of self-peptides alters Human Leukocyte Antigen Class I-restricted antigen presentation and generates tumor specific epitopes

Petersen, J., Rossjohn, J.

(2009) Proc Natl Acad Sci U S A 106: 2776-2781

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) phospho-peptide 1097-1105 from insulin receptor substrate 2 (IRS2): RVA(Sep)PTSGV (protein)
Unique Ligands	CD, GOL, MG

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3VCL \| pdb_00003vcl	Download File View File

Crystal Structure of HLA-B7 with the HCMV pp65 peptide RPHERNGFTVL

Petersen, J., Rossjohn, J.

(2012) J Immunol 188: 2742-2748

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Human betaherpesvirus 5
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) peptide from Tegument protein pp65 (protein)
Unique Ligands	GOL, NI

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4GG6 \| pdb_00004gg6	Download File View File

Protein complex

Broughton, S.E., Theodossis, A., Petersen, J., Reid, H.H., Rossjohn, J.

(2012) Immunity 37: 611-621

Released	2012-10-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) HLA class II histocompatibility antigen, DQ beta 1 chain (protein) Peptide from Alpha/beta-gliadin MM1 (protein) T-CELL RECEPTOR, SP3.4 ALPHA CHAIN (protein) T-CELL RECEPTOR, SP3.4 BETA CHAIN (protein)
Unique Ligands	NAG

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4GG8 \| pdb_00004gg8	Download File View File

Immune Receptor

Broughton, S.E., Theodossis, A., Petersen, J., Reid, H.H., Rossjohn, J.

(2012) Immunity 37: 611-621

Released	2012-10-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	T-CELL RECEPTOR, SP3.4 ALPHA CHAIN (protein) T-CELL RECEPTOR, SP3.4 BETA CHAIN (protein)
Unique branched monosaccharides	FRU, GLC

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4OZF \| pdb_00004ozf	Download File View File

JR5.1 protein complex

Petersen, J., Reid, H.H., Rossjohn, J.

(2014) Nat Struct Mol Biol 21: 480-488

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) HLA class II histocompatibility antigen, DQ beta 1 chain (protein) T-CELL RECEPTOR, JR5.1 ALPHA CHAIN (protein) T-CELL RECEPTOR, JR5.1 BETA CHAIN (protein) deamidated Gliadin-alpha2 peptide (protein)
Unique Ligands	NAG

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4OZG \| pdb_00004ozg	Download File View File

D2 protein complex

Petersen, J., Reid, H.H., Rossjohn, J.

(2014) Nat Struct Mol Biol 21: 480-488

Released	2014-04-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) HLA class II histocompatibility antigen, DQ beta 1 chain (protein) T-cell receptor, d2, alpha chain (protein) T-cell receptor, d2, beta chain (protein) deamidated Gliadin-alpha2 peptide (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

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4OZH \| pdb_00004ozh	Download File View File

S16 protein complex

Petersen, J., Reid, H.H., Rossjohn, J.

(2014) Nat Struct Mol Biol 21: 480-488

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	Gliadin-alpha2 peptide (protein) HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) HLA class II histocompatibility antigen, DQ beta 1 chain (protein) T-cell receptor, s16, alpha chain (protein) T-cell receptor, s16, beta chain (protein)
Unique Ligands	CA, NAG

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4OZI \| pdb_00004ozi	Download File View File

S2 protein complex

Petersen, J., Reid, H.H., Rossjohn, J.

(2014) Nat Struct Mol Biol 21: 480-488

Released	2014-04-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) HLA class II histocompatibility antigen, DQ beta 1 chain (protein) T-cell receptor, s2, alpha chain (protein) T-cell receptor, s2, beta chain (protein) deamidated Gliadin-alpha1 peptide (protein)
Unique Ligands	CA, NAG

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4Y19 \| pdb_00004y19	Download File View File

immune complex

Beringer, D.X., Petersen, J., Reid, H.H., Rossjohn, J.

(2015) Nat Immunol 16: 1153-1161

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	FS18_alpha (protein) FS18_beta (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-4 beta chain (protein) Insulin (protein)
Unique Ligands	MLI
Unique branched monosaccharides	BMA, MAN, NAG

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4Z7U \| pdb_00004z7u	Download File View File

S13 complex

Petersen, J., Rossjohn, J., Reid, H.H., Koning, F.

(2015) J Immunol 194: 6112-6122

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	MHC class II HLA-DQ-alpha chain (protein) MHC class II HLA-DQ-beta-1 (protein) T-CELL RECEPTOR, S13 ALPHA CHAIN (protein) T-CELL RECEPTOR, S13 BETA CHAIN (protein) deamidated DQ8-glia-alpha1 peptide (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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4Z7V \| pdb_00004z7v	Download File View File

L3-12 complex

Petersen, J., Rossjohn, J., Reid, H.H., Koning, F.

(2015) J Immunol 194: 6112-6122

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	MHC class II HLA-DQ-alpha chain (protein) MHC class II HLA-DQ-beta-1 (protein) T-CELL RECEPTOR, L3-12 ALPHA CHAIN (protein) T-CELL RECEPTOR, L3-12 BETA CHAIN (protein) deamidated DQ8-glia-alpha1 peptide (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, MAN, NAG

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4Z7W \| pdb_00004z7w	Download File View File

T316 complex

Petersen, J., Rossjohn, J., Reid, H.H., Koning, F.

(2015) J Immunol 194: 6112-6122

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens Triticum aestivum
Macromolecule	DQ8-glia-alpha1 (protein) MHC class II HLA-DQ-alpha chain (protein) MHC class II HLA-DQ-beta-1 (protein) T-CELL RECEPTOR, T316 ALPHA CHAIN (protein) T-CELL RECEPTOR, T316 BETA CHAIN (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	FUC, MAN, NAG

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5AIS \| pdb_00005ais	Download File View File

Complex of human hematopoietic prostagandin D2 synthase (hH-PGDS) in complex with an active site inhibitor.

Edfeldt, F., Evenas, J., Lepisto, M., Ward, A., Petersen, J., Wissler, L., Rohman, M., Sivars, U., Svensson, K., Perry, M., Feierberg, I., Zhou, X., Hansson, T., Narjes, F.

(2015) Bioorg Med Chem Lett 25: 2496

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE (protein)
Unique Ligands	CWC, GSH, MG

1 to 25 of 79 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1UIS | pdb_00001uis

1XQM | pdb_00001xqm

1YZW | pdb_00001yzw

2XYA | pdb_00002xya

2Y6C | pdb_00002y6c

2Y6D | pdb_00002y6d

3B8E | pdb_00003b8e

3FQN | pdb_00003fqn

3FQR | pdb_00003fqr

3FQT | pdb_00003fqt

3FQU | pdb_00003fqu

3FQW | pdb_00003fqw

3FQX | pdb_00003fqx

3VCL | pdb_00003vcl

4GG6 | pdb_00004gg6

4GG8 | pdb_00004gg8

4OZF | pdb_00004ozf

4OZG | pdb_00004ozg

4OZH | pdb_00004ozh

4OZI | pdb_00004ozi

4Y19 | pdb_00004y19

4Z7U | pdb_00004z7u

4Z7V | pdb_00004z7v

4Z7W | pdb_00004z7w

5AIS | pdb_00005ais