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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cho, C."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Homo sapiens (18)
	Vibrio vulnificus (4)
	Saccharomyces cerevisiae S288C (3)
	Schizosaccharomyces pombe 972h- (3)
	Clostridium acetobutylicum ATCC 824 (2)
	Clostridium acetobutylicum EA 2018 (2)
	Escherichia coli K-12 (1)
	Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (1)
	Mus musculus (1)
	Pasteurella multocida subsp. gallicida P1059 (1)

More...

Taxonomy

	Eukaryota (27)
	Bacteria (14)

Experimental Method

	X-RAY DIFFRACTION (28)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (37)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (3)
	1.5 - 2.0 (6)
	2.0 - 2.5 (7)
	2.5 - 3.0 (8)
	3.0 - 3.5 (2)
	3.5 - 4.0 (3)
	4.0 - 4.5 (5)
	> 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (9)
	2015 - 2019 (12)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (16)
	Transferases (12)
	Ligases (8)

Symmetry Type

	Asymmetric (24)
	Cyclic (10)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (10)
	Alpha and beta proteins (a+b) (6)
	Artifacts (6)

AllSelected

1 to 25 of 37 Structures

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2LXW \| pdb_00002lxw	Download File View File

The solution structure of XIAP(RING)-binding domain of human XAF1

Tse, M., Cho, C., Guan, X., Sze, K.

To be published

Released	2013-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	XIAP-associated factor 1 (protein)
Unique Ligands	ZN

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3ERR \| pdb_00003err	Download File View File

Microtubule binding domain from mouse cytoplasmic dynein as a fusion with seryl-tRNA synthetase

Carter, A.P.

(2008) Science 322: 1691-1695

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Mus musculus Thermus thermophilus HB27
Macromolecule	fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus (protein)
Unique Ligands	AMP

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3QMZ \| pdb_00003qmz	Download File View File

Crystal structure of the cytoplasmic dynein heavy chain motor domain

Cho, C., Carter, A.P., Jin, L., Vale, R.D.

(2011) Science 331: 1159-1165

Released	2011-03-16
Method	X-RAY DIFFRACTION 6 Å
Organisms	Saccharomyces cerevisiae Schistosoma japonicum
Macromolecule	Cytoplasmic dynein heavy chain (protein) Glutathione-S-transferase (protein)

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3UGQ \| pdb_00003ugq	Download File View File

Crystal structure of the apo form of the yeast mitochondrial threonyl-tRNA synthetase determined at 2.1 Angstrom resolution

Peterson, K.M., Ling, J., Simonovic, I., Cho, C., Soll, D., Simonovic, M.

(2012) Proc Natl Acad Sci U S A 109: 3281-3286

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Threonyl-tRNA synthetase, mitochondrial (protein)
Unique Ligands	K, SO4, ZN

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3UGT \| pdb_00003ugt	Download File View File

Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase - orthorhombic crystal form

Peterson, K.M., Ling, J., Simonovic, I., Cho, C., Soll, D., Simonovic, M.

(2012) Proc Natl Acad Sci U S A 109: 3281-3286

Released	2012-02-22
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Threonyl-tRNA synthetase, mitochondrial (protein)
Unique Ligands	ZN

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3UH0 \| pdb_00003uh0	Download File View File

Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase (MST1) in complex with threonyl sulfamoyl adenylate

Peterson, K.M., Ling, J., Simonovic, I., Cho, C., Soll, D., Simonovic, M.

(2012) Proc Natl Acad Sci U S A 109: 3281-3286

Released	2012-02-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Threonyl-tRNA synthetase, mitochondrial (protein)
Unique Ligands	SO4, TSB, ZN

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4I9A \| pdb_00004i9a	Download File View File

Crystal Structure of Sus scrofa Quinolinate Phosphoribosyltransferase in Complex with Nicotinate Mononucleotide

Youn, H.-S., Kim, M.-K., Kang, K.B., Kim, T.G., Lee, J.-G., An, J.Y., Park, K.R., Lee, Y., Kang, J.Y., Song, H.E., Park, I., Cho, C., Fukuoka, S., Eom, S.H.

(2013) PLoS One 8: e62027-e62027

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.096 Å
Organisms	Sus scrofa
Macromolecule	quinolinate phosphoribosyltransferase (protein)
Unique Ligands	NCN

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4MAG \| pdb_00004mag	Download File View File

Crystal structure of the Periplasmic Sialic Acid Binding Protein from Vibrio Cholerea

Ramaswamy, S., Cho, C., Apicella, M.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1801-1811

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Vibrio cholerae MJ-1236
Macromolecule	Sialic Acid Binding Protein (protein)
Unique Ligands	CO, SO4

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4MMP \| pdb_00004mmp	Download File View File

Structure of Sialic Acid Binding Protein from Pasturella Multocida

Ramaswamy, S., Thanuja, G.S.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1801-1811

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Pasteurella multocida subsp. gallicida P1059
Macromolecule	Sialic Acid Binding Protein (protein)
Unique Ligands	SLB

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4MNP \| pdb_00004mnp	Download File View File

Structure of the Sialic Acid Binding Protein from Fusobacterium Nucleatum subsp. nucleatum ATCC 25586

Thanuja, G., Ramaswamy, S.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1801-1811

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Macromolecule	N-acetylneuraminate-binding protein (protein)
Unique Ligands	SLB

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4WYR \| pdb_00004wyr	Download File View File

Crystal structure of thiolase mutation (V77Q,N153Y,A286K) from Clostridium acetobutylicum

Kim, S., Ha, S.C., Ahn, J.W., Kim, E.J., Lim, J.H., Kim, K.J.

(2015) Nat Commun 6: 8410-8410

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium acetobutylicum ATCC 824
Macromolecule	Acetyl-CoA acetyltransferase (protein)
Unique Ligands	GOL, PEG

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4WYS \| pdb_00004wys	Download File View File

Crystal structure of thiolase from Escherichia coli

Kim, S., Ha, S.C., Ahn, J.W., Kim, E.J., Lim, J.H., Kim, K.J.

(2015) Nat Commun 6: 8410-8410

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Acetyl-CoA acetyltransferase (protein)

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4XL2 \| pdb_00004xl2	Download File View File

Crystal structure of oxidized form of thiolase from Clostridium acetobutylicum

Kim, S., Ha, S.C., Ahn, J.W., Kim, E.J., Lim, J.H., Kim, K.J.

(2015) Nat Commun 6: 8410-8410

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Clostridium acetobutylicum ATCC 824
Macromolecule	Acetyl-CoA acetyltransferase (protein)
Unique Ligands	ACT, GOL, PEG

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4XL3 \| pdb_00004xl3	Download File View File

Crystal structure of reduced form of thiolase from Clostridium acetobutylicum

Kim, S., Ha, S.C., Ahn, J.W., Kim, E.J., Lim, J.H., Kim, K.J.

(2015) Nat Commun 6: 8410-8410

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Clostridium acetobutylicum EA 2018
Macromolecule	Acetyl-CoA acetyltransferase (protein)
Unique Ligands	GOL

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4XL4 \| pdb_00004xl4	Download File View File

Crystal structure of thiolase from Clostridium acetobutylicum in complex with CoA

Kim, S., Ha, S.C., Ahn, J.W., Kim, E.J., Lim, J.H., Kim, K.J.

(2015) Nat Commun 6: 8410-8410

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium acetobutylicum EA 2018
Macromolecule	Acetyl-CoA acetyltransferase (protein)
Unique Ligands	COA, GOL

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5TDA \| pdb_00005tda	Download File View File

Crystal structure of the UBR-box domain from UBR2 in complex with RLWS N-degron

Munoz-Escobar, J., Kozlov, G., Gehring, K.

(2017) Structure 25: 719-729.e3

Released	2017-03-22
Method	X-RAY DIFFRACTION 0.79 Å
Organisms	Homo sapiens
Macromolecule	ARG-LEU-TRP-SER peptide (protein) E3 ubiquitin-protein ligase UBR2 (protein)
Unique Ligands	ZN

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5TDB \| pdb_00005tdb	Download File View File

Crystal structure of the human UBR-box domain from UBR2 in complex with asymmetrically double methylated arginine peptide

Munoz-Escobar, J., Kozlov, G., Gehring, K.

(2017) Structure 25: 719-729.e3

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.101 Å
Organisms	Homo sapiens
Macromolecule	DA2-ILE-PHE-SER peptide (protein) E3 ubiquitin-protein ligase UBR2 (protein)
Unique Ligands	EDO, ZN

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5TDC \| pdb_00005tdc	Download File View File

Crystal structure of the human UBR-box domain from UBR1 in complex with monomethylated arginine peptide.

Kozlov, G., Munoz-Escobar, J., Matta-Camacho, E., Gehring, K.

(2017) Structure 25: 719-729.e3

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.607 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UBR1 (protein) NMM-ILE-PHE-SER peptide (protein)
Unique Ligands	SO4, ZN

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5TDD \| pdb_00005tdd	Download File View File

Human UBR-box from UBR2 in complex with HIFS peptide

Munoz-Escobar, J., Kozlov, G., Gehring, K.

(2017) Structure 25: 719-729.e3

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UBR2 (protein) HIS-ILE-PHE-SER peptide (protein)
Unique Ligands	EDO, ZN

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5UM3 \| pdb_00005um3	Download File View File

Crystal structure of the V122L mutant of human UBR-box domain from UBR2

Munoz Escobar, J., Kozlov, G., Gehring, K.

(2017) Structure 25: 719-729.e3

Released	2017-03-22
Method	X-RAY DIFFRACTION 1.198 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UBR2 (protein)
Unique Ligands	ZN

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6JPQ \| pdb_00006jpq	Download File View File

CryoEM structure of Abo1 hexamer - ADP complex

Cho, C., Jang, J., Song, J.J.

(2019) Nat Commun 10: 5764-5764

Released	2020-08-19
Method	ELECTRON MICROSCOPY 4.44 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Uncharacterized AAA domain-containing protein C31G5.19 (protein)

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6JPU \| pdb_00006jpu	Download File View File

CryoEM structure of Abo1 hexamer - apo complex

Cho, C., Jang, J., Song, J.J.

(2019) Nat Commun 10: 5764-5764

Released	2019-12-25
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Uncharacterized AAA domain-containing protein C31G5.19 (protein)

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6JQ0 \| pdb_00006jq0	Download File View File

CryoEM structure of Abo1 Walker B (E372Q) mutant hexamer - ATP complex

Cho, C., Jang, J., Song, J.J.

(2019) Nat Commun 10: 5764-5764

Released	2019-12-25
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Schizosaccharomyces pombe 972h- Spodoptera frugiperda
Macromolecule	Uncharacterized AAA domain-containing protein C31G5.19 (protein) unknown substrate (protein)
Unique Ligands	ADP, ATP

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6VN2 \| pdb_00006vn2	Download File View File

USP7 IN COMPLEX WITH LIGAND COMPOUND 18

Leger, P.R., Wustrow, D.J., Hu, D.X., Krapp, S., Maskos, K., Blaesse, M.

(2020) J Med Chem 63: 5398-5420

Released	2020-04-29
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin carboxyl-terminal hydrolase 7 (protein)
Unique Ligands	ACT, R44