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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "NENA"

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Homo sapiens (38)
	Periplaneta americana (6)
	Aequorea victoria (3)
	Aliarcobacter butzleri RM4018 (3)
	Cyriopagopus schmidti (2)
	Halalkalibacterium halodurans C-125 (2)
	Mus musculus (2)
	Thrixopelma pruriens (2)
	Androctonus australis (1)
	Diguetia canities (1)

More...

Taxonomy

	Eukaryota (38)
	Bacteria (5)

Experimental Method

ELECTRON MICROSCOPY (38)

Polymer Entity Type

Protein (38)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (14)
	3.0 - 3.5 (16)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (30)

Membrane Protein Annotation

	PDBTM (38)
	mpstruc (29)
	OPM (23)
	MemProtMD (20)

Symmetry Type

	Asymmetric (33)
	Cyclic (5)

AllSelected

1 to 25 of 38 Structures

Page 1 of 2

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6J8G \| pdb_00006j8g	Download File View File

Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (Y1755 up)

Shen, H., Liu, D., Lei, J., Yan, N.

(2019) Science 363: 1303-1308

Released	2019-02-27
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9SL, NAG
Unique branched monosaccharides	NAG

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6J8H \| pdb_00006j8h	Download File View File

Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (Y1755 down)

Shen, H., Liu, D., Lei, J., Yan, N.

(2019) Science 363: 1303-1308

Released	2019-02-27
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9SL, NAG
Unique branched monosaccharides	NAG

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6J8I \| pdb_00006j8i	Download File View File

Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, ProTx-II and tetrodotoxin (Y1755 up)

Shen, H., Liu, D., Lei, J., Yan, N.

(2019) Science 363: 1303-1308

Released	2019-02-27
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9SR, NAG
Unique branched monosaccharides	NAG

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6J8J \| pdb_00006j8j	Download File View File

Structure of human voltage-gated sodium channel Nav1.7 in complex with auxiliary beta subunits, ProTx-II and tetrodotoxin (Y1755 down)

Shen, H., Liu, D., Lei, J., Yan, N.

(2019) Science 363: 1303-1308

Released	2019-02-27
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9SR, NAG
Unique branched monosaccharides	NAG

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6N4Q \| pdb_00006n4q	Download File View File

CryoEM structure of Nav1.7 VSD2 (actived state) in complex with the gating modifier toxin ProTx2

Xu, H., Rohou, A., Arthur, C.P., Estevez, A., Ciferri, C., Payandeh, J., Koth, C.M.

(2019) Cell 176: 702

Released	2019-01-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Aliarcobacter butzleri RM4018 Homo sapiens Mus musculus Thrixopelma pruriens
Macromolecule	Beta/omega-theraphotoxin-Tp2a (protein) Fab heavy chain (protein) Fab light chain (protein) Nav1.7 VSD2-NavAb chimera (protein)

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6N4R \| pdb_00006n4r	Download File View File

CryoEM structure of Nav1.7 VSD2 (deactived state) in complex with the gating modifier toxin ProTx2

Xu, H., Rohou, A., Arthur, C.P., Estevez, A., Ciferri, C., Payandeh, J., Koth, C.M.

(2019) Cell 176: 702

Released	2019-01-23
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Aliarcobacter butzleri RM4018 Homo sapiens Mus musculus Thrixopelma pruriens
Macromolecule	Beta/omega-theraphotoxin-Tp2a (protein) Fab heavy chain (protein) Fab light chain (protein) Nav1.7 VSD2-NavAb chimera (protein)

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6NT3 \| pdb_00006nt3	Download File View File

Cryo-EM structure of a human-cockroach hybrid Nav channel.

Clairfeuille, T., Rohou, A., Payandeh, J.

(2019) Science

Released	2019-02-20
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Periplaneta americana
Macromolecule	Sodium channel protein type 9 subunit alpha, Sodium channel protein PaFPC1, chimeric construct (protein)
Unique Ligands	76F, AJP, LHG, NAG, Y01
Unique branched monosaccharides	BMA, NAG

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6NT4 \| pdb_00006nt4	Download File View File

Cryo-EM structure of a human-cockroach hybrid Nav channel bound to alpha-scorpion toxin AaH2.

Clairfeuille, T., Rohou, A., Payandeh, J.

(2019) Science 363:

Released	2019-02-20
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Androctonus australis Homo sapiens Periplaneta americana
Macromolecule	Alpha-mammal toxin AaH2 (protein) Sodium channel protein PaFPC1,Sodium channel protein type 9 subunit alpha,Sodium channel protein PaFPC1 (protein)
Unique Ligands	76F, AJP, LHG, NAG, Y01
Unique branched monosaccharides	BMA, NAG

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6VXO \| pdb_00006vxo	Download File View File

NaChBac-Nav1.7VSDII chimera in nanodisc

Yan, N., Gao, S.

(2020) Proc Natl Acad Sci U S A 117: 14187-14193

Released	2020-06-24
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Halalkalibacterium halodurans C-125 Homo sapiens
Macromolecule	NaChBac-Nav1.7VSDII chimera (protein)
Unique Ligands	POV

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6W6O \| pdb_00006w6o	Download File View File

NaChBac-Nav1.7VSDII chimera and HWTX-IV complex

Yan, N., Gao, S.

(2020) Proc Natl Acad Sci U S A 117: 14187-14193

Released	2020-06-24
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Cyriopagopus schmidti Halalkalibacterium halodurans C-125 Homo sapiens
Macromolecule	Huwentoxin-IV (protein) NaChBac-Nav1.7VSDII chimera (protein)
Unique Ligands	POV

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7K48 \| pdb_00007k48	Download File View File

Structure of NavAb/Nav1.7-VS2A chimera trapped in the resting state by tarantula toxin m3-Huwentoxin-IV

Wisedchaisri, G., Tonggu, L., Gamal El-Din, T.M., McCord, E., Zheng, N., Catterall, W.A.

(2021) Mol Cell 81: 38-48.e4

Released	2020-12-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Aliarcobacter butzleri RM4018 Cyriopagopus schmidti Escherichia coli K-12 Homo sapiens
Macromolecule	Maltose/maltodextrin-binding periplasmic protein,Ion transport protein,Sodium channel protein type 9 subunit alpha chimera (protein) Mu-theraphotoxin-Hs2a (protein)

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7W9K \| pdb_00007w9k	Download File View File

Cryo-EM structure of human Nav1.7-beta1-beta2 complex at 2.2 angstrom resolution

Yan, N., Huang, G., Liu, D., Wei, P., Shen, H.

(2022) Cell Rep 39: 110735-110735

Released	2022-06-01
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	1PW, 9Z9, LPE, NA, NAG, P5S, PCW, Y01
Unique branched monosaccharides	NAG

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7W9L \| pdb_00007w9l	Download File View File

Cryo-EM structure of human Nav1.7(E406K)-beta1-beta2 complex

Yan, N., Huang, G., Liu, D., Wei, P., Shen, H.

(2022) Cell Rep 39: 110735-110735

Released	2022-06-01
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9Z9, LPE, NAG, P5S, PCW, Y01
Unique branched monosaccharides	NAG

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7W9M \| pdb_00007w9m	Download File View File

Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, ProTx-II and tetrodotoxin (S6IV pi helix conformer)

Yan, N., Huang, G., Liu, D., Wei, P., Shen, H.

(2022) Cell Rep 39: 110735-110735

Released	2022-05-25
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9SR, LPE, NAG, P5S, Y01
Unique branched monosaccharides	NAG

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7W9P \| pdb_00007w9p	Download File View File

Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (S6IV pi helix conformer)

Yan, N., Huang, G., Liu, D., Wei, P., Shen, H.

(2022) Cell Rep 39: 110735-110735

Released	2022-05-25
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	1PW, 9SL, LPE, NAG, P5S, PCW, Y01
Unique branched monosaccharides	NAG

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7W9T \| pdb_00007w9t	Download File View File

Cryo-EM structure of human Nav1.7(E406K) in complex with auxiliary beta subunits, huwentoxin-IV and saxitoxin (S6IV alpha helix conformer)

Yan, N., Huang, G., Liu, D., Wei, P.

(2022) Cell Rep 39: 110735-110735

Released	2022-05-25
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	9SL, 9Z9, LPE, NAG, P5S, PCW, Y01
Unique branched monosaccharides	NAG

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7XM9 \| pdb_00007xm9	Download File View File

Cryo-EM structure of human NaV1.7/beta1/beta2-XEN907

zhang, J.T., Jiang, D.H.

(2022) Nat Struct Mol Biol 29: 1208-1216

Released	2022-11-30
Method	ELECTRON MICROSCOPY 3.22 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Isoform 3 of Sodium channel protein type 9 subunit alpha,Green fluorescent protein (protein) Sodium channel subunit beta-1,Green fluorescent protein (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	6OU, G2E, NAG
Unique branched monosaccharides	NAG

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7XMF \| pdb_00007xmf	Download File View File

Cryo-EM structure of human NaV1.7/beta1/beta2-Nav1.7-IN2

Zhang, J.T., Jiang, D.H.

(2022) Nat Struct Mol Biol 29: 1208-1216

Released	2022-11-30
Method	ELECTRON MICROSCOPY 3.07 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Isoform 3 of Sodium channel protein type 9 subunit alpha,Green fluorescent protein (protein) Sodium channel subunit beta-1,Green fluorescent protein (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	G2W, NAG
Unique branched monosaccharides	NAG

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7XMG \| pdb_00007xmg	Download File View File

Cryo-EM structure of human NaV1.7/beta1/beta2-TCN-1752

Jiang, D.H., Zhang, J.T.

(2022) Nat Struct Mol Biol 29: 1208-1216

Released	2022-11-30
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Isoform 3 of Sodium channel protein type 9 subunit alpha,Green fluorescent protein (protein) Sodium channel subunit beta-1,Green fluorescent protein (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	G4I, NAG
Unique branched monosaccharides	NAG

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7XVE \| pdb_00007xve	Download File View File

Human Nav1.7 mutant class-I

Huang, G., Wu, Q., Li, Z., Pan, X., Yan, N.

(2022) Proc Natl Acad Sci U S A 119: e2209164119-e2209164119

Released	2022-08-10
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	1PW, CLR, LPE, NAG, P5S, PCW, Y01
Unique branched monosaccharides	NAG

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7XVF \| pdb_00007xvf	Download File View File

Nav1.7 mutant class2

Huang, G., Wu, Q., Li, Z., Pan, X., Yan, N.

(2022) Proc Natl Acad Sci U S A 119: e2209164119-e2209164119

Released	2022-08-10
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens
Macromolecule	Sodium channel protein type 9 subunit alpha (protein) Sodium channel subunit beta-1 (protein) Sodium channel subunit beta-2 (protein)
Unique Ligands	1PW, CLR, LPE, NAG, P5S, PCW, Y01
Unique branched monosaccharides	NAG

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8F0P \| pdb_00008f0p	Download File View File

Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305

Kschonsak, M., Jao, C.C., Arthur, C.P., Rohou, A.L., Bergeron, P., Ortwine, D., McKerall, S.J., Hackos, D.H., Deng, L., Chen, J., Sutherlin, D., Dragovich, P.S., Volgraf, M., Wright, M.R., Payandeh, J., Ciferri, C., Tellis, J.C.

(2023) Elife 12:

Released	2023-04-12
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Homo sapiens Periplaneta americana
Macromolecule	Sodium channel protein PaFPC1,Sodium channel protein type 9 subunit alpha chimera (protein)
Unique Ligands	NAG, PEE, X7L, Y01
Unique branched monosaccharides	BMA, NAG

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8F0Q \| pdb_00008f0q	Download File View File

Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310

(2023) Elife 12:

Released	2023-04-12
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens Periplaneta americana
Macromolecule	Sodium channel protein PaFPC1,Sodium channel protein type 9 subunit alpha chimera (protein)
Unique Ligands	BMA, NAG, PEE, X7R, Y01
Unique branched monosaccharides	BMA, NAG

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8F0R \| pdb_00008f0r	Download File View File

Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565

(2023) Elife 12:

Released	2023-04-12
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Periplaneta americana
Macromolecule	Sodium channel protein PaFPC1,Sodium channel protein type 9 subunit alpha chimera (protein)
Unique Ligands	NAG, PEE, X7W, Y01
Unique branched monosaccharides	BMA, NAG

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8F0S \| pdb_00008f0s	Download File View File

Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296

(2023) Elife 12:

Released	2023-04-12
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Diguetia canities Homo sapiens Periplaneta americana
Macromolecule	Beta-diguetoxin-Dc1a (protein) Sodium channel protein PaFPC1,Sodium channel protein type 9 subunit alpha chimera (protein)
Unique Ligands	NAG, PEE, X80, Y01
Unique branched monosaccharides	BMA, NAG

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

6J8G | pdb_00006j8g

6J8H | pdb_00006j8h

6J8I | pdb_00006j8i

6J8J | pdb_00006j8j

6N4Q | pdb_00006n4q

6N4R | pdb_00006n4r

6NT3 | pdb_00006nt3

6NT4 | pdb_00006nt4

6VXO | pdb_00006vxo

6W6O | pdb_00006w6o

7K48 | pdb_00007k48

7W9K | pdb_00007w9k

7W9L | pdb_00007w9l

7W9M | pdb_00007w9m

7W9P | pdb_00007w9p

7W9T | pdb_00007w9t

7XM9 | pdb_00007xm9

7XMF | pdb_00007xmf

7XMG | pdb_00007xmg

7XVE | pdb_00007xve

7XVF | pdb_00007xvf

8F0P | pdb_00008f0p

8F0Q | pdb_00008f0q

8F0R | pdb_00008f0r

8F0S | pdb_00008f0s