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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "BXT93_09065"

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Search Summary

This query matches 66 Structures.

Refinements

Structure Determination Methodology

experimental (66)

Scientific Name of Source Organism

	Homo sapiens (16)
	Cystovirus phi6 (7)
	Flavobacterium phage FL-1 (6)
	Orthohantavirus puumalaense (5)
	Rift Valley fever virus (5)
	Lama glama (4)
	Orthohantavirus hantanense (4)
	Enterobacteria phage PRD1 (3)
	Leishmania major (3)
	Oryctolagus cuniculus (3)

More...

Taxonomy

	Riboviria (33)
	Eukaryota (24)
	Duplodnaviria (7)
	Varidnaviria (5)
	unclassified sequences (2)
	Bacteria (1)
	Monodnaviria (1)
	Viruses incertae sedis (1)
	unclassified bacterial viruses (1)

Experimental Method

	ELECTRON MICROSCOPY (52)
	X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (66)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (6)
	3.0 - 3.5 (13)
	3.5 - 4.0 (9)
	4.0 - 4.5 (9)
	> 4.5 (22)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (33)
	2020 - 2024 (28)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (6)
	MemProtMD (4)
	OPM (4)
	mpstruc (4)

Symmetry Type

	Cyclic (31)
	Asymmetric (19)
	Icosahedral (10)
	Helical (6)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 25 of 66 Structures

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1YQ5 \| pdb_00001yq5	Download File View File

PRD1 vertex protein P5

Merckel, M.C., Huiskonen, J.T., Goldman, A., Bamford, D.H., Tuma, R.

(2005) Mol Cell 18: 161-170

Released	2005-04-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Minor capsid protein (protein)

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1YQ6 \| pdb_00001yq6	Download File View File

PRD1 vertex protein P5

Merckel, M.C., Huiskonen, J.T., Goldman, A., Bamford, D.H., Tuma, R.

(2005) Mol Cell 18: 161-170

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Minor capsid protein (protein)

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1YQ8 \| pdb_00001yq8	Download File View File

PRD1 vertex protein P5

Merckel, M.C., Huiskonen, J.T., Goldman, A., Bamford, D.H., Tuma, R.

(2005) Mol Cell 18: 161-170

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	Minor capsid protein (protein)

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4BOM \| pdb_00004bom	Download File View File

Structure of herpesvirus fusion glycoprotein B-bilayer complex revealing the protein-membrane and lateral protein-protein interaction

Maurer, U.E., Zeev-Ben-Mordehai, Z., Pandurangan, A.P., Cairns, T.M., Hannah, B.P., Whitbeck, J.C., Eisenberg, R.J., Cohen, G.H., Topf, M., Huiskonen, J.T., Grunewald, K.

(2013) Structure 21: 1396-1405

Released	2013-07-31
Method	ELECTRON MICROSCOPY 27 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	ENVELOPE GLYCOPROTEIN B (protein)

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4C53 \| pdb_00004c53	Download File View File

Crystal Structure of Guanarito virus GP2 in the post-fusion conformation

Parsy, M., Huiskonen, J.T., Harlos, K., Bowden, T.A.

(2013) J Virol 87: 13070

Released	2013-10-02
Method	X-RAY DIFFRACTION 4.14 Å
Organisms	Mammarenavirus guanaritoense
Macromolecule	PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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5AC9 \| pdb_00005ac9	Download File View File

Structure-based energetics of protein interfaces guide Foot-and-Mouth disease virus vaccine design

Kotecha, A., Seago, J., Scott, K., Burman, A., Loureiro, S., Ren, J., Porta, C., Ginn, H.M., Jackson, T., PerezMartin, E., Siebert, C.A., Paul, G., Huiskonen, J.T., Jones, I.M., Esnouf, R.M., Fry, E.E., Maree, F.F., Charleston, B., Stuart, D.I.

(2015) Nat Struct Mol Biol 22: 788

Released	2015-09-23
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Foot-and-mouth disease virus O
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)

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5ACA \| pdb_00005aca	Download File View File

Structure-based energetics of protein interfaces guide Foot-and-Mouth disease virus vaccine design

Kotecha, A., Seago, J., Scott, K., Burman, A., Loureiro, S., Ren, J., Porta, C., Ginn, H.M., Jackson, T., Perez-Martin, E., Siebert, C.A., Paul, G., Huiskonen, J.T., Jones, I.M., Esnouf, R.M., Fry, E.E., Maree, F.F., Charleston, B., Stuart, D.I.

(2015) Nat Struct Mol Biol 22: 788

Released	2015-09-23
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Foot-and-mouth disease virus SAT 2
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)

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5D8A \| pdb_00005d8a	Download File View File

Crystal structure of recombinant foot-and-mouth-disease virus A22-H2093F empty capsid

(2015) Nat Struct Mol Biol 22: 788-794

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Foot-and-mouth disease virus A
Macromolecule	VP1 (protein) VP2 (protein) VP3 (protein) VP4 (protein)

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5DDJ \| pdb_00005ddj	Download File View File

Crystal structure of recombinant foot-and-mouth-disease virus O1M-S2093Y empty capsid

(2015) Nat Struct Mol Biol 22: 788-794

Released	2015-09-23
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Foot-and-mouth disease virus O
Macromolecule	Foot and mouth disease virus, VP1 (protein) Foot and mouth disease virus, VP2 (protein) Foot and mouth disease virus, VP3 (protein) Genome polyprotein (protein)

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5FJ5 \| pdb_00005fj5	Download File View File

Structure of the in vitro assembled bacteriophage phi6 polymerase complex

Ilca, S., Kotecha, A., Sun, X., Poranen, M.P., Stuart, D.I., Huiskonen, J.T.

(2015) Nat Commun 6: 8843

Released	2015-11-04
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Cystovirus phi6
Macromolecule	MAJOR INNER PROTEIN P1 (protein)

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5FJ6 \| pdb_00005fj6	Download File View File

Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex

Ilca, S., Kotecha, A., Sun, X., Poranen, M.P., Stuart, D.I., Huiskonen, J.T.

(2015) Nat Commun 6: 8843

Released	2015-11-04
Method	ELECTRON MICROSCOPY 7.9 Å
Organisms	Cystovirus phi6
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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5FJ7 \| pdb_00005fj7	Download File View File

Structure of the P2 polymerase inside in vitro assembled bacteriophage phi6 polymerase complex, with P1 included

Ilca, S., Kotecha, A., Sun, X., Poranen, M.P., Stuart, D.I., Huiskonen, J.T.

(2015) Nat Commun 6: 8843

Released	2015-11-04
Method	ELECTRON MICROSCOPY 7.9 Å
Organisms	Cystovirus phi6
Macromolecule	MAJOR INNER PROTEIN P1 (protein) RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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5FT2 \| pdb_00005ft2	Download File View File

Sub-tomogram averaging of Lassa virus glycoprotein spike from virus- like particles at pH 5

Li, S., Zhaoyang, S., Pryce, R., Parsy, M.L., Fehling, S.K., Schlie, K., Siebert, C.A., Garten, W., Bowden, T.A., Strecker, T., Huiskonen, J.T.

(2016) PLoS Pathog 12: 5418

Released	2016-03-02
Method	ELECTRON MICROSCOPY 16.4 Å
Organisms	Lassa virus Josiah
Macromolecule	PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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5FVC \| pdb_00005fvc	Download File View File

Structure of RNA-bound decameric HMPV nucleoprotein

Renner, M., Bertinelli, M., Leyrat, C., Paesen, G.C., Saraiva de Oliveira, L.F., Huiskonen, J.T., Grimes, J.M.

(2016) Elife 5: e12627-e12627

Released	2016-02-24
Method	X-RAY DIFFRACTION 4.17 Å
Organisms	Escherichia coli BL21(DE3) human metapneumovirus
Macromolecule	HMPV NUCLEOPROTEIN (protein) RNA (nucleic acid)

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5FVD \| pdb_00005fvd	Download File View File

Human metapneumovirus N0-P complex

Renner, M., Bertinelli, M., Leyrat, C., Paesen, G.C., Saraiva de Oliveira, L.F., Huiskonen, J.T., Grimes, J.M.

(2016) Elife 5: e12627-e12627

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	human metapneumovirus
Macromolecule	NUCLEOCAPSID (protein) PHOSPHOPROTEIN (protein)
Unique Ligands	CL

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5FXU \| pdb_00005fxu	Download File View File

Crystal Structure of Puumala virus Gn glycoprotein ectodomain

Li, S., Rissanen, I., Zeltina, A., Hepojoki, J., Raghwani, J., Harlos, K., Pybus, O.G., Huiskonen, J.T., Bowden, T.A.

(2016) Cell Rep 15: 959

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Orthohantavirus puumalaense
Macromolecule	ENVELOPE POLYPROTEIN (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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5FYN \| pdb_00005fyn	Download File View File

Sub-tomogram averaging of Tula virus glycoprotein spike

Li, S., Rissanen, I., Zeltina, A., Hepojoki, J., Raghwani, J., Harlos, K., Pybus, O.G., Huiskonen, J.T., Bowden, T.A.

(2016) Cell Rep 15: 959

Released	2016-06-08
Method	ELECTRON MICROSCOPY 15.6 Å
Organisms	Orthohantavirus puumalaense
Macromolecule	PUUMALA VIRUS GN GLYCOPROTEIN (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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5G47 \| pdb_00005g47	Download File View File

Structure of Gc glycoprotein from severe fever with thrombocytopenia syndrome virus in the trimeric postfusion conformation

Halldorsson, S., Behrens, A.J., Harlos, K., Huiskonen, J.T., Elliott, R.M., Crispin, M., Brennan, B., Bowden, T.A.

(2016) Proc Natl Acad Sci U S A 113: 7154

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	SFTSV GC (protein)
Unique Ligands	CL, NAG

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5K47 \| pdb_00005k47	Download File View File

CryoEM structure of the human Polycystin-2/PKD2 TRP channel

Pike, A.C.W., Grieben, M., Shintre, C.A., Tessitore, A., Shrestha, L., Mukhopadhyay, S., Mahajan, P., Chalk, R., Burgess-Brown, N.A., Huiskonen, J.T., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2017) Nat Struct Mol Biol 24: 114-122

Released	2016-08-24
Method	ELECTRON MICROSCOPY 4.22 Å
Organisms	Homo sapiens
Macromolecule	Polycystin-2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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5MUU \| pdb_00005muu	Download File View File

dsRNA bacteriophage phi6 nucleocapsid

Sun, Z., El Omari, K., Sun, X., Ilca, S.L., Kotecha, A., Stuart, D.I., Poranen, M.M., Huiskonen, J.T.

(2017) Nat Commun 8: 14814-14814

Released	2017-03-22
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Cystovirus phi6
Macromolecule	Major inner protein P1 (protein) Major outer capsid protein (protein) Packaging enzyme P4 (protein)

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5MUV \| pdb_00005muv	Download File View File

Atomic structure fitted into a localized reconstruction of bacteriophage phi6 packaging hexamer P4

Sun, Z., El Omari, K., Sun, X., Ilca, S., Kotecha, A., Stuart, D.I., Poranen, M.M., Huiskonen, J.T.

(2017) Nat Commun 8: 14814-14814

Released	2017-03-22
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Cystovirus phi6
Macromolecule	Packaging enzyme P4 (protein)
Unique Ligands	ADP, CA

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5MUW \| pdb_00005muw	Download File View File

Atomic structure of P4 packaging enzyme fitted into a localized reconstruction of bacteriophage phi6 vertex

Sun, Z., El Omari, K., Sun, X., Ilca, S., Kotecha, A., Stuart, D.I., Poranen, M.M., Huiskonen, J.T.

(2017) Nat Commun 8: 14814-14814

Released	2017-03-22
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Cystovirus phi6
Macromolecule	Packaging enzyme P4 (protein)
Unique Ligands	ADP, CA

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5OAC \| pdb_00005oac	Download File View File

FLiP major capsid protein

De Colibus, L., Stuart, D.I., Huiskonen, J.T.

(2017) Proc Natl Acad Sci U S A 114: 8378-8383

Released	2017-07-26
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Bacteriophage sp.
Macromolecule	Major capsid protein (protein)

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5OPG \| pdb_00005opg	Download File View File

Structure of the Hantaan virus Gn glycoprotein ectodomain

Rissanen, I., Stass, R., Zeltina, A., Li, S., Hepojoki, J., Harlos, K., Gilbert, R.J.C., Huiskonen, J.T., Bowden, T.A.

(2017) J Virol 91:

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Orthohantavirus hantanense
Macromolecule	envelope glycoprotein Gn (protein)
Unique Ligands	GOL, NAG, SO4

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5OXE \| pdb_00005oxe	Download File View File

Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1

Huiskonen, J.T., Ptchelkine, D., Phillpps, S.E.V.

(2017) Nat Commun 8: 1436-1436

Released	2017-11-22
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Aeropyrum pernix bacilliform virus 1 Japan/Tanaka/2005
Macromolecule	Major virion protein (protein)

1 to 25 of 66 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1YQ5 | pdb_00001yq5

1YQ6 | pdb_00001yq6

1YQ8 | pdb_00001yq8

4BOM | pdb_00004bom

4C53 | pdb_00004c53

5AC9 | pdb_00005ac9

5ACA | pdb_00005aca

5D8A | pdb_00005d8a

5DDJ | pdb_00005ddj

5FJ5 | pdb_00005fj5

5FJ6 | pdb_00005fj6

5FJ7 | pdb_00005fj7

5FT2 | pdb_00005ft2

5FVC | pdb_00005fvc

5FVD | pdb_00005fvd

5FXU | pdb_00005fxu

5FYN | pdb_00005fyn

5G47 | pdb_00005g47

5K47 | pdb_00005k47

5MUU | pdb_00005muu

5MUV | pdb_00005muv

5MUW | pdb_00005muw

5OAC | pdb_00005oac

5OPG | pdb_00005opg

5OXE | pdb_00005oxe