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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Qian, J."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (6)
	Mus musculus (4)
	Tetradesmus obliquus (4)
	Henipavirus nipahense (3)
	Lactococcus cremoris subsp. cremoris MG1363 (3)
	Rattus norvegicus (3)
	synthetic construct (3)
	Severe acute respiratory syndrome coronavirus 2 (1)
	Staphylococcus aureus (1)

Taxonomy

	Eukaryota (16)
	Bacteria (4)
	Riboviria (4)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (16)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (21)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (2)
	2010 - 2014 (5)
	2020 - 2024 (9)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (9)
	Ligases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (19)
	Cyclic (3)

SCOP Classification

	All beta proteins (8)
	Alpha and beta proteins (a+b) (3)
	Alpha and beta proteins (a/b) (4)
	Artifacts (3)

AllSelected

1 to 21 of 21 Structures

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1FC6 \| pdb_00001fc6	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)

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1FC7 \| pdb_00001fc7	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)

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1FC9 \| pdb_00001fc9	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)

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1FCF \| pdb_00001fcf	Download File View File

PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Liao, D.I., Qian, J., Chisholm, D.A., Jordan, D.B., Diner, B.A.

(2000) Nat Struct Biol 7: 749-753

Released	2001-01-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tetradesmus obliquus
Macromolecule	PHOTOSYSTEM II D1 PROTEASE (protein)
Unique Ligands	SO4

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2R9C \| pdb_00002r9c	Download File View File

Calpain 1 proteolytic core inactivated by ZLAK-3001, an alpha-ketoamide

Qian, J., Campbell, R.L., Davies, P.L.

(2008) J Med Chem 51: 5264-5270

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Calpain-1 catalytic subunit (protein)
Unique Ligands	CA, CL, GOL, GRD

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2R9F \| pdb_00002r9f	Download File View File

Calpain 1 proteolytic core inactivated by ZLAK-3002, an alpha-ketoamide

Qian, J., Campbell, R.L., Davies, P.L.

(2008) J Med Chem 51: 5264-5270

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rattus norvegicus
Macromolecule	Calpain-1 catalytic subunit (protein)
Unique Ligands	CA, CL, GOL, K2Z

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3FOL \| pdb_00003fol	Download File View File

Crystal structure of the Class I MHC Molecule H-2Kwm7 with a Single Self Peptide VNDIFERI

Brims, D.R., Qian, J., Jarchum, I., Yamada, T., Mikesh, L., Palmieri, E., Lund, T., Hattori, M., Shabanowitz, J., Hunt, D.F., Ramagopal, U.A., Malashkevich, V.N., Almo, S.C., Nathenson, S.G., DiLorenzo, T.P.

(2010) Int Immunol 22: 191-203

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	8 residue synthetic peptide (protein) Beta-2-microglobulin (protein) MHC (protein)

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3FOM \| pdb_00003fom	Download File View File

Crystal structure of the Class I MHC Molecule H-2Kwm7 with a Single Self Peptide IQQSIERL

(2010) Int Immunol 22: 191-203

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	8 residue synthetic peptide (protein) Beta-2-microglobulin (protein) MHC (protein)
Unique Ligands	CL

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3FON \| pdb_00003fon	Download File View File

Crystal structure of the Class I MHC Molecule H-2Kwm7 with a Single Self Peptide VNDIFEAI

Malashkevich, V.N., Qian, J., Jarchum, I., Yamada, T., Mikesh, L., Palmieri, E., Lund, T., Hattori, M., Shabanowitz, J., Hunt, D.F., Ramagopal, U.A., Brims, D.R., Almo, S.C., Nathenson, S.G., DiLorenzo, T.P.

(2010) Int Immunol 22: 191-203

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Beta-2-microglobulin (protein) MHC (protein) Peptide (protein)

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3VK6 \| pdb_00003vk6	Download File View File

Crystal structure of a phosphotyrosine binding domain

Sivaraman, J., Mukherjee, M.

(2012) EMBO J 31: 1308-1319

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	E3 ubiquitin-protein ligase Hakai (protein)
Unique Ligands	ZN

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4G9J \| pdb_00004g9j	Download File View File

Protein Ser/Thr phosphatase-1 in complex with cell-permeable peptide

Sukackaite, R., Chatterjee, J., Beullens, M., Bollen, M., Koehn, M., Hart, D.J.

(2012) Angew Chem Int Ed Engl 51: 10054-10059

Released	2012-09-19
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit (protein) synthetic peptide (protein)
Unique Ligands	MN

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6XSW \| pdb_00006xsw	Download File View File

Structure of the Notch3 NRR in complex with an antibody Fab Fragment

Bard, J.

(2021) Cell Rep Med 2: 100279-100279

Released	2021-07-21
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Anti-N3 Fab Heavy Chain (protein) Anti-N3 Fab Light Chain (protein) Neurogenic locus notch homolog protein 3 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

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7VW3 \| pdb_00007vw3	Download File View File

Cryo-EM structure of SaCas9-sgRNA-DNA ternary complex

Du, W.H., Qian, J.Q., Huang, Q.

(2023) Int J Mol Sci 24:

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Staphylococcus aureus synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9 (protein) Non-target DNA strand (nucleic acid) Target DNA strand (nucleic acid) single-guide RNA (nucleic acid)
Unique Ligands	MG

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7XUP \| pdb_00007xup	Download File View File

Crystal structure of TPe3.0

Chen, X., Qian, J.Y., Sun, N.N., Zhong, F.R., Wu, Y.Z.

(2022) Nature 611: 715-720

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.602 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Transcriptional regulator, PadR-like family (protein)

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7XUQ \| pdb_00007xuq	Download File View File

Crystal structure of Tpe3.0 complexed with N-Boc-3-alkenylindole

Chen, X., Qian, J.Y., Sun, N.N., Zhong, F.R., Wu, Y.Z.

(2022) Nature 611: 715-720

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Transcriptional regulator, PadR-like family (protein)
Unique Ligands	I1A

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8W4F \| pdb_00008w4f	Download File View File

SARS-CoV-2 spike protein in complex with a trivalent nanobody

Jiang, X.Y., Qian, J.Q., Zhu, H.X., Qin, Q., Huang, Q.

(2024) Int J Biol Macromol 256: 128191-128191

Released	2024-07-24
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike glycoprotein (protein) Tribody (protein)

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8XPS \| pdb_00008xps	Download File View File

Structure of Nipah virus Bangladesh string G protein ectodomain monomer bound to single-domain antibody n425 at 3.22 Angstroms overall resolution

Sun, L., Chen, Z., Sun, Y., Mao, Q.

(2024) Nat Commun 15: 6892-6892

Released	2024-09-18
Method	ELECTRON MICROSCOPY 3.22 Å
Organisms	Henipavirus nipahense Homo sapiens
Macromolecule	Nipah virus Bangladesh string G protein (protein) single-domain antibody n425 (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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8XPY \| pdb_00008xpy	Download File View File

Structure of Nipah virus Malaysia string G protein ectodomain monomer bound to single-domain antibody n425 at 3.63 Angstroms overall resolution

Sun, L., Chen, Z., Sun, Y., Mao, Q.

(2024) Nat Commun 15: 6892-6892

Released	2024-09-18
Method	ELECTRON MICROSCOPY 3.63 Å
Organisms	Henipavirus nipahense Homo sapiens
Macromolecule	Glycoprotein G (protein) single-domain antibody n425 (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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8XQ3 \| pdb_00008xq3	Download File View File

Structure of Nipah virus Bangladesh string G protein ectodomain tetramer bound to single-domain antibody n425 at 5.87 Angstroms overall resolution

Sun, L., Chen, Z., Sun, Y., Mao, Q.

(2024) Nat Commun 15: 6892-6892

Released	2024-09-18
Method	ELECTRON MICROSCOPY 5.87 Å
Organisms	Henipavirus nipahense Homo sapiens
Macromolecule	Nipah virus Bangladesh string G protein (protein) single-domain antibody n425 (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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8ZF1 \| pdb_00008zf1	Download File View File

Crystal structure of a Chemo Triplet Photoenzyme (CTPe)

Chen, X., Qian, J.Y., Guo, J., Wu, Y.Z., Zhong, F.R.

(2024) J Am Chem Soc 146: 19030-19041

Released	2024-07-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactococcus cremoris subsp. cremoris MG1363
Macromolecule	Transcriptional regulator, PadR-like family (protein)
Unique Ligands	U1O

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9JA8 \| pdb_00009ja8	Download File View File

Crystal structure of human phosphodiesterase 10A in complex with N-(2-amino-2-thioxoethyl)-2-(3-(3-(dimethylcarbamoyl)-6-fluoroimidazo[1,2-a]pyridin-2-yl)azetidin-1-yl)quinoline-4-carboxamide

Zhang, F.C., Huang, Y.Y., Luo, H.B., Guo, L.

(2025) Acs Pharmacol Transl Sci 8: 256-269

Released	2025-01-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	A1L31, MG, ZN

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FC6 | pdb_00001fc6

1FC7 | pdb_00001fc7

1FC9 | pdb_00001fc9

1FCF | pdb_00001fcf

2R9C | pdb_00002r9c

2R9F | pdb_00002r9f

3FOL | pdb_00003fol

3FOM | pdb_00003fom

3FON | pdb_00003fon

3VK6 | pdb_00003vk6

4G9J | pdb_00004g9j

6XSW | pdb_00006xsw

7VW3 | pdb_00007vw3

7XUP | pdb_00007xup

7XUQ | pdb_00007xuq

8W4F | pdb_00008w4f

8XPS | pdb_00008xps

8XPY | pdb_00008xpy

8XQ3 | pdb_00008xq3

8ZF1 | pdb_00008zf1

9JA8 | pdb_00009ja8