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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Maslennikov, I.V."

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Search Summary

This query matches 133 Structures.

Refinements

Structure Determination Methodology

experimental (133)

Scientific Name of Source Organism

	Homo sapiens (70)
	Mus musculus (27)
	Macaca mulatta (22)
	synthetic construct (20)
	Bos taurus (6)
	Equus caballus (6)
	Striga hermonthica (4)
	Ondatra zibethicus (3)
	Oryctolagus cuniculus (3)
	Severe acute respiratory syndrome coronavirus 2 (3)

More...

Taxonomy

	Eukaryota (131)
	other sequences (20)
	Riboviria (5)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (103)
	ELECTRON MICROSCOPY (30)

Polymer Entity Type

	Protein (133)
	RNA (12)
	DNA (11)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (15)
	2.0 - 2.5 (50)
	2.5 - 3.0 (39)
	3.0 - 3.5 (17)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (27)
	2015 - 2019 (63)
	2020 - 2024 (39)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (12)
	Oxidoreductases (2)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (21)
	MemProtMD (10)
	OPM (12)
	mpstruc (7)

Symmetry Type

	Asymmetric (55)
	Cyclic (75)
	Dihedral (4)
	Tetrahedral (2)

SCOP Classification

	All alpha proteins (4)
	Alpha and beta proteins (a/b) (6)
	All beta proteins (1)
	Artifacts (3)

AllSelected

1 to 25 of 133 Structures

Page 1 of 6

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1UJ3 \| pdb_00001uj3	Download File View File

Crystal structure of a humanized Fab fragment of anti-tissue-factor antibody in complex with tissue factor

Ohto, U., Mizutani, R., Nakamura, M., Adachi, H., Satow, Y.

(2004) J Synchrotron Radiat 11: 105-108

Released	2004-07-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	IgG Fab heavy chain (protein) IgG Fab light chain (protein) tissue factor (protein)

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2E56 \| pdb_00002e56	Download File View File

Crystal structure of human MD-2

Ohto, U., Satow, Y.

(2007) Science 316: 1632-1634

Released	2007-06-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Lymphocyte antigen 96 (protein)
Unique Ligands	MYR, NAG

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2E59 \| pdb_00002e59	Download File View File

Crystal structure of human MD-2 in complex with lipid IVa

Ohto, U., Satow, Y.

(2007) Science 316: 1632-1634

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	Lymphocyte antigen 96 (protein)
Unique Ligands	LP4, LP5, NAG

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3AK8 \| pdb_00003ak8	Download File View File

Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis

Miyamoto, T., Asahina, Y., Miyazaki, S., Shimizu, H., Ohto, U., Noguchi, S., Satow, Y.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 17-22

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Macromolecule	DNA protection during starvation protein (protein)
Unique Ligands	MG, SO4

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3AK9 \| pdb_00003ak9	Download File View File

Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis, FE-soaked form

Miyamoto, T., Asahina, Y., Miyazaki, S., Shimizu, H., Ohto, U., Noguchi, S., Satow, Y.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 17-22

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Macromolecule	DNA protection during starvation protein (protein)
Unique Ligands	FE2, MG, SO4

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3B2D \| pdb_00003b2d	Download File View File

Crystal structure of human RP105/MD-1 complex

Ohto, U., Shimizu, T.

(2011) J Mol Biology 413: 815-825

Released	2011-11-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	CD180 antigen (protein) Lymphocyte antigen 86 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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3M7O \| pdb_00003m7o	Download File View File

Crystal structure of mouse MD-1 in complex with phosphatidylcholine

Harada, H., Ohto, U., Satow, Y.

(2010) J Mol Biology 400: 838-846

Released	2010-06-09
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	Lymphocyte antigen 86 (protein)
Unique Ligands	BEN, L9R, NAG

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3T6Q \| pdb_00003t6q	Download File View File

Crystal structure of mouse RP105/MD-1 complex

Ohto, U., Shimizu, T.

(2011) J Mol Biology 413: 815-825

Released	2011-11-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	CD180 antigen (protein) Lymphocyte antigen 86 (protein)
Unique Ligands	CU, GOL, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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3THC \| pdb_00003thc	Download File View File

Crystal structure of human beta-galactosidase in complex with galactose

Ohto, U., Shimizu, T.

(2012) J Biological Chem 287: 1801-1812

Released	2011-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	CL, EDO, GAL, NAG, SO4

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3THD \| pdb_00003thd	Download File View File

Crystal structure of human beta-galactosidase in complex with 1-deoxygalactonojirimycin

Ohto, U., Shimizu, T.

(2012) J Biological Chem 287: 1801-1812

Released	2011-12-07
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	CL, DGJ, EDO, NAG, SO4

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3VQ1 \| pdb_00003vq1	Download File View File

Crystal structure of mouse TLR4/MD-2/lipid IVa complex

Ohto, U., Shimizu, T.

(2012) Proc Natl Acad Sci U S A 109: 7421-7426

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4 (protein)
Unique Ligands	LP4, LP5, NAG
Unique branched monosaccharides	NAG

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3VQ2 \| pdb_00003vq2	Download File View File

Crystal structure of mouse TLR4/MD-2/LPS complex

Ohto, U., Shimizu, T.

(2012) Proc Natl Acad Sci U S A 109: 7421-7426

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Mus musculus
Macromolecule	Lymphocyte antigen 96 (protein) Toll-like receptor 4 (protein)
Unique Ligands	DAO, LP4, LP5, MYR, NAG
Unique branched monosaccharides	NAG

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3W3G \| pdb_00003w3g	Download File View File

Crystal structure of human TLR8 (unliganded form)

Tanji, H., Ohto, U., Shimizu, T.

(2013) Science 339: 1426-1429

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 8 (protein)
Unique Ligands	BU3, NAG
Unique branched monosaccharides	BMA, NAG

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3W3J \| pdb_00003w3j	Download File View File

Crystal structure of human TLR8 in complex with CL097

Tanji, H., Ohto, U., Shimizu, T.

(2013) Science 339: 1426-1429

Released	2013-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 8 (protein)
Unique Ligands	C09, GOL, NAG, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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3W3K \| pdb_00003w3k	Download File View File

Crystal structure of human TLR8 in complex with CL075

Tanji, H., Ohto, U., Shimizu, T.

(2013) Science 339: 1426-1429

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 8 (protein)
Unique Ligands	L07, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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3W3L \| pdb_00003w3l	Download File View File

Crystal structure of human TLR8 in complex with Resiquimod (R848) crystal form 1

Tanji, H., Ohto, U., Shimizu, T.

(2013) Science 339: 1426-1429

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 8 (protein)
Unique Ligands	NAG, RX8, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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3W3M \| pdb_00003w3m	Download File View File

Crystal structure of human TLR8 in complex with Resiquimod (R848) crystal form 2

Tanji, H., Ohto, U., Shimizu, T.

(2013) Science 339: 1426-1429

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 8 (protein)
Unique Ligands	NAG, RX8, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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3W3N \| pdb_00003w3n	Download File View File

Crystal structure of human TLR8 in complex with Resiquimod (R848) crystal form 3

Tanji, H., Ohto, U., Shimizu, T.

(2013) Science 339: 1426-1429

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 8 (protein)
Unique Ligands	GOL, NAG, RX8
Unique branched monosaccharides	BMA, MAN, NAG

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3W67 \| pdb_00003w67	Download File View File

Crystal structure of mouse alpha-tocopherol transfer protein in complex with alpha-tocopherol and phosphatidylinositol-(3,4)-bisphosphate

Ohto, U., Satow, Y.

(2013) Science 340: 1106-1110

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Mus musculus
Macromolecule	Alpha-tocopherol transfer protein (protein)
Unique Ligands	3PT, VIV

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3W68 \| pdb_00003w68	Download File View File

Crystal structure of mouse alpha-tocopherol transfer protein in complex with alpha-tocopherol and phosphatidylinositol-(4,5)-bisphosphate

Ohto, U., Satow, Y.

(2013) Science 340: 1106-1110

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	Alpha-tocopherol transfer protein (protein)
Unique Ligands	4PT, PBU, PO4, VIV