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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Haynes, B.F."

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Search Summary

This query matches 502 Structures.

Refinements

Structure Determination Methodology

experimental (502)

Scientific Name of Source Organism

	Homo sapiens (339)
	Human immunodeficiency virus 1 (16)
	adeno-associated virus 8 (11)
	synthetic construct (10)
	Adeno-associated virus (9)
	Adeno-associated virus 9 (7)
	Pseudomonas aeruginosa (6)
	Bufavirus-1 (5)
	Methanosarcina thermophila (5)
	Sinsheimervirus phiX174 (5)

More...

Taxonomy

	Eukaryota (349)
	Monodnaviria (115)
	Riboviria (18)
	Bacteria (16)
	other sequences (10)
	Archaea (5)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (414)
	ELECTRON MICROSCOPY (84)
	NEUTRON DIFFRACTION (12)

Polymer Entity Type

	Protein (501)
	DNA (20)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (136)
	1.5 - 2.0 (191)
	2.0 - 2.5 (53)
	2.5 - 3.0 (58)
	3.0 - 3.5 (43)
	3.5 - 4.0 (17)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (6)
	2000 - 2004 (19)
	2005 - 2009 (74)
	2010 - 2014 (108)
	2015 - 2019 (123)
	2020 - 2024 (166)
	2025 - 2029 (4)

Enzyme Classification Name

	Lyases (337)
	Hydrolases (16)
	Transferases (5)
	Oxidoreductases (7)
	Ligases (3)
	Isomerases (1)

Membrane Protein Annotation

	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (350)
	Icosahedral (112)
	Cyclic (39)
	Dihedral (9)

SCOP Classification

	All beta proteins (351)
	Alpha and beta proteins (a/b) (14)
	All alpha proteins (9)
	Artifacts (20)
	Alpha and beta proteins (a+b) (8)

AllSelected

1 to 25 of 502 Structures

Page 1 of 21

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1AL0 \| pdb_00001al0	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1997) Nature 389: 308-313

Released	1998-01-28
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	CAPSID PROTEIN GPF (protein) SCAFFOLDING PROTEIN GPB (protein) SCAFFOLDING PROTEIN GPD (protein) SPIKE PROTEIN GPG (protein)

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1C8D \| pdb_00001c8d	Download File View File

CANINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Canine parvovirus
Macromolecule	CANINE PARVOVIRUS CAPSID (protein)
Unique Ligands	CA

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1C8E \| pdb_00001c8e	Download File View File

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Feline parvovirus
Macromolecule	FELINE PANLEUKOPENIA VIRUS CAPSID (protein)

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1C8F \| pdb_00001c8f	Download File View File

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Feline panleukopenia virus
Macromolecule	FELINE PANLEUKOPENIA VIRUS CAPSID (protein)
Unique Ligands	CA

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1C8G \| pdb_00001c8g	Download File View File

FELINE PANLEUKOPENIA VIRUS EMPTY CAPSID STRUCTURE

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Feline panleukopenia virus
Macromolecule	FELINE PANLEUKOPENIA VIRUS CAPSID (protein)
Unique Ligands	CA

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1C8H \| pdb_00001c8h	Download File View File

CANINE PARVOVIRUS STRAIN D EMPTY CAPSID STRUCTURE AT PH 5.5

Rossmann, M.G., Simpson, A.A.

(2000) J Mol Biology 300: 597-610

Released	2000-08-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Canine parvovirus
Macromolecule	CANINE PARVOVIRUS CAPSID (protein)
Unique Ligands	CA

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1CD3 \| pdb_00001cd3	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1999) J Mol Biology 288: 595-608

Released	1999-04-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	PROTEIN (CAPSID PROTEIN GPF) (protein) PROTEIN (SCAFFOLDING PROTEIN GPB) (protein) PROTEIN (SCAFFOLDING PROTEIN GPD) (protein) PROTEIN (SPIKE PROTEIN GPG) (protein)

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1DNV \| pdb_00001dnv	Download File View File

PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA

Simpson, A.A., Chipmann, P.R., Baker, T.S., Tijssen, P., Rossmann, M.G.

(1998) Structure 6: 1355-1367

Released	1999-02-16
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Galleria mellonella densovirus
Macromolecule	GALLERIA MELLONELLA DENSOVIRUS CAPSID PROTEIN (protein)

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1EM0 \| pdb_00001em0	Download File View File

COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN

Neidle, S., Sanderson, M., Bennett, M., Krah, A., Wien, F., Garman, E., McKenna, R.

(2000) Proc Natl Acad Sci U S A 97: 9476-9481

Released	2000-08-21
Method	X-RAY DIFFRACTION 0.9 Å
Macromolecule	DNA (5'-D((CBR)PCPTPAPGPG)-3') (nucleic acid)
Unique Ligands	MG, PNI

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1FPV \| pdb_00001fpv	Download File View File

STRUCTURE DETERMINATION OF FELINE PANLEUKOPENIA VIRUS EMPTY PARTICLES

Agbandje, M., Rossmann, M.G.

(1993) Proteins 16: 155-171

Released	1994-01-31
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Feline panleukopenia virus
Macromolecule	FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL PROTEIN 2 (protein)

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1G0E \| pdb_00001g0e	Download File View File

SITE-SPECIFIC MUTANT (HIS64 REPLACED WITH ALA) OF HUMAN CARBONIC ANHYDRASE II COMPLEXED WITH 4-METHYLIMIDAZOLE

Duda, D., McKenna, R.

(2001) Biochemistry 40: 1741-1748

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE II (protein)
Unique Ligands	4MZ, HG, ZN

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1G0F \| pdb_00001g0f	Download File View File

SITE-SPECIFIC MUTANT (HIS64 REPLACED WITH ALA) OF HUMAN CARBONIC ANHYDRASE II

Duda, D., McKenna, R.

(2001) Biochemistry 40: 1741-1748

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE II (protein)
Unique Ligands	HG, ZN

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1GFF \| pdb_00001gff	Download File View File

THE ATOMIC STRUCTURE OF THE DEGRADED PROCAPSID PARTICLE OF THE BACTERIOPHAGE G4: INDUCED STRUCTURAL CHANGES IN THE PRESENCE OF CALCIUM IONS AND FUNCTIONAL IMPLICATIONS

Rossmann, M.G.

(1996) J Mol Biology 256: 736-750

Released	1996-04-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia phage G4
Macromolecule	BACTERIOPHAGE G4 CAPSID PROTEINS GPF, GPG, GPJ (protein)

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1IJJ \| pdb_00001ijj	Download File View File

THE X-RAY CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN RABBIT SKELETAL MUSCLE ACTIN AND LATRUNCULIN A AT 2.85 A RESOLUTION

Vorobiev, S.M., Bubb, M.R., Almo, S.C.

(2002) J Biological Chem 277: 20999-21006

Released	2002-04-15
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Oryctolagus cuniculus
Macromolecule	ACTIN, ALPHA SKELETAL MUSCLE (protein)
Unique Ligands	ATP, LAR, MG

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1KVP \| pdb_00001kvp	Download File View File

STRUCTURAL ANALYSIS OF THE SPIROPLASMA VIRUS, SPV4, IMPLICATIONS FOR EVOLUTIONARY VARIATION TO OBTAIN HOST DIVERSITY AMONG THE MICROVIRIDAE, ELECTRON MICROSCOPY, ALPHA CARBONS ONLY

McKenna, R.

(1998) Structure 6: 135-145

Released	1999-02-23
Method	ELECTRON MICROSCOPY 27 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	SPV4 CAPSID PROTEIN VP1 (protein)

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1LCU \| pdb_00001lcu	Download File View File

Polylysine Induces an Antiparallel Actin Dimer that Nucleates Filament Assembly: Crystal Structure at 3.5 A Resolution

Bubb, M.R., Govindasamy, L., Yarmola, E.G., Vorobiev, S.M., Almo, S.C., Somasundaram, T., Chapman, M.S., Agbandje-Mckenna, M., Mckenna, R.

(2002) J Biological Chem 277: 20999-21006

Released	2002-05-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, CA, CL, LAR

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1LZV \| pdb_00001lzv	Download File View File

Site-Specific Mutant (Tyr7 replaced with His) of Human Carbonic Anhydrase II

Tu, C.K., Qian, M., An, H., Wadhwa, N.R., Duda, D.M., Yoshioka, C., Pathak, Y., McKenna, R., Laipis, P.J., Silverman, D.N.

(2002) J Biological Chem 277: 38870-38876

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Carbonic Anhydrase II (protein)
Unique Ligands	ZN

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1MOO \| pdb_00001moo	Download File View File

Site Specific Mutant (H64A) of Human Carbonic Anhydrase II at high resolution

Duda, D.M., Govindasamy, L., Agbandje-McKenna, M., Tu, C.K., Silverman, D.N., McKenna, R.

(2003) Acta Crystallogr D Biol Crystallogr 59: 93-104

Released	2002-09-18
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Carbonic Anhydrase II (protein)
Unique Ligands	4MZ, HG, ZN

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1MVM \| pdb_00001mvm	Download File View File

MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES C

Llamas-Saiz, A.L., Agbandje-McKenna, M., Rossmann, M.G.

(1997) Acta Crystallogr D Biol Crystallogr 53: 93-102

Released	1998-02-25
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Minute virus of mice
Macromolecule	PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN) (protein) DNA (5'-D(CPAPAPA)-3') (nucleic acid) DNA (5'-D(CPCPAPCPCPCPCPAPAPCPA)-3') (nucleic acid) DNA (5'-D(PA)-3') (nucleic acid)

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1NM8 \| pdb_00001nm8	Download File View File

Structure of Human Carnitine Acetyltransferase: Molecular Basis for Fatty Acyl Transfer

Wu, D., Govindasamy, L., Lian, W., Gu, Y., Kukar, T., Agbandje-McKenna, M., McKenna, R.

(2003) J Biological Chem 278: 13159-13165

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Carnitine O-acetyltransferase (protein)

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1RB8 \| pdb_00001rb8	Download File View File

The phiX174 DNA binding protein J in two different capsid environments.

Bernal, R.A., Hafenstein, S., Esmeralda, R., Fane, B.A., Rossmann, M.G.

(2004) J Mol Biology 337: 1109-1122

Released	2004-04-13
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia phage alpha3 Sinsheimervirus phiX174
Macromolecule	Capsid protein (protein) Major spike protein (protein) Small core protein (protein) DNA (5'-D(PCPAPAPA)-3') (nucleic acid)
Unique Ligands	DC

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1RDW \| pdb_00001rdw	Download File View File

Actin Crystal Dynamics: Structural Implications for F-actin Nucleation, Polymerization and Branching Mediated by the Anti-parallel Dimer

Reutzel, R., Yoshioka, C., Govindasamy, L., Yarmola, E.G., Agbandje-Mckenna, M., Bubb, M.R., Mckenna, R.

(2004) J Struct Biol 146: 291-301

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, LAR, MG

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1RFQ \| pdb_00001rfq	Download File View File

Actin Crystal Dynamics: Structural Implications for F-actin Nucleation, Polymerization and Branching Mediated by the Anti-parallel Dimer

Reutzel, R., Yoshioka, C., Govindasamy, L., Yarmola, E.G., Agbandje-McKenna, M., Bubb, M.R., McKenna, R.

(2004) J Struct Biol 146: 291-301

Released	2003-12-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein)
Unique Ligands	ATP, LAR, MG