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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chatterjee, D."

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Search Summary

This query matches 50 Structures.

Refinements

Structure Determination Methodology

experimental (50)

Scientific Name of Source Organism

	Homo sapiens (29)
	Pseudomonas fluorescens Pf0-1 (6)
	synthetic construct (6)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (5)
	Mus musculus (4)
	Podospora anserina (3)
	Schizosaccharomyces pombe 972h- (2)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Severe acute respiratory syndrome coronavirus (1)
	Severe acute respiratory syndrome-related coronavirus (1)

More...

Taxonomy

	Eukaryota (38)
	Bacteria (10)
	other sequences (6)
	Riboviria (4)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (35)
	ELECTRON MICROSCOPY (13)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (50)

Refinement Resolution (Å)

	1.5 - 2.0 (13)
	2.0 - 2.5 (12)
	2.5 - 3.0 (12)
	3.0 - 3.5 (5)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (10)
	2020 - 2024 (30)

Enzyme Classification Name

	Transferases (29)
	Hydrolases (10)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (39)
	Cyclic (11)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	Alpha and beta proteins (a/b) (3)
	Artifacts (4)

AllSelected

1 to 25 of 50 Structures

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3PJT \| pdb_00003pjt	Download File View File

Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221

Sondermann, H., Navarro, M.V.A.S., Krasteva, P.

(2011) PLoS Biol 9: e1000588-e1000588

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.5154 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	Cyclic dimeric GMP binding protein (protein)
Unique Ligands	C2E

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3PJU \| pdb_00003pju	Download File View File

Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522

Sondermann, H., Navarro, M.V.A.S., Krasteva, P.

(2011) PLoS Biol 9: e1000588-e1000588

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.4991 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	Cyclic dimeric GMP binding protein (protein)
Unique Ligands	C2E

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3PJV \| pdb_00003pjv	Download File View File

Structure of Pseudomonas fluorescence LapD periplasmic domain

Sondermann, H., Navarro, M.V.A.S., Chatterjee, D.

(2011) PLoS Biol 9: e1000588-e1000588

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.7727 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	Cyclic dimeric GMP binding protein (protein)

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3PJW \| pdb_00003pjw	Download File View File

Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, I23

Sondermann, H., Navarro, M.V.A.S.

(2011) PLoS Biol 9: e1000588-e1000588

Released	2011-02-09
Method	X-RAY DIFFRACTION 3.1006 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	Cyclic dimeric GMP binding protein (protein)

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3PJX \| pdb_00003pjx	Download File View File

Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32

Sondermann, H., Navarro, M.V.A.S.

(2011) PLoS Biol 9: e1000588-e1000588

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.0002 Å
Organisms	Pseudomonas fluorescens Pf0-1
Macromolecule	Cyclic dimeric GMP binding protein (protein)
Unique Ligands	EDO

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4FGO \| pdb_00004fgo	Download File View File

Legionella pneumophila LapG (calcium-bound)

Chatterjee, D., Boyd, C.D., O'Toole, G.A., Sondermann, H.

(2012) J Bacteriol 194: 4415-4425

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.903 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Periplasmic protein (protein)
Unique Ligands	CA

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4FGP \| pdb_00004fgp	Download File View File

Legionella pneumophila LapG (EGTA-treated)

Chatterjee, D., Boyd, C.D., O'Toole, G.A., Sondermann, H.

(2012) J Bacteriol 194: 4415-4425

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Periplasmic protein (protein)

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4FGQ \| pdb_00004fgq	Download File View File

Legionella pneumophila LapG

Chatterjee, D., Boyd, C.D., O'Toole, G.A., Sondermann, H.

(2012) J Bacteriol 194: 4415-4425

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.645 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Periplasmic protein (protein)

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4QVK \| pdb_00004qvk	Download File View File

Apo-crystal structure of Podospora anserina methyltransferase PaMTH1

Kudlinzki, D., Linhard, V.L., Chatterjee, D., Saxena, K., Sreeramulu, S., Schwalbe, H.

(2015) J Biological Chem 290: 16415-16430

Released	2015-05-27
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Podospora anserina
Macromolecule	PaMTH1 Methyltransferase (protein)
Unique Ligands	EDO

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4U64 \| pdb_00004u64	Download File View File

Structure of the periplasmic output domain of the Legionella pneumophila LapD ortholog CdgS9 in the apo state

Chatterjee, D., Cooley, R.B., Boyd, C.D., Mehl, R.A., O'Toole, G.A., Sondermann, H.S.

(2014) Elife 3: e03650-e03650

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.141 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Two component histidine kinase, GGDEF domain protein/EAL domain protein (protein)

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4U65 \| pdb_00004u65	Download File View File

Structure of the periplasmic output domain of the Legionella pneumophila LapD ortholog CdgS9 in complex with Pseudomonas fluorescens LapG

Chatterjee, D., Cooley, R.B., Boyd, C.D., Mehl, R.A., O'Toole, G.A., Sondermann, H.S.

(2014) Elife 3: e03650-e03650

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Pseudomonas fluorescens Pf0-1
Macromolecule	Putative cystine protease (protein) Two component histidine kinase, GGDEF domain protein/EAL domain protein (protein)
Unique Ligands	CA

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4YMG \| pdb_00004ymg	Download File View File

Crystal structure of SAM-bound Podospora anserina methyltransferase PaMTH1

Kudlinzki, D., Linhard, V.L., Chatterjee, D., Saxena, K., Sreeramulu, S., Schwalbe, H.

(2015) J Biological Chem 290: 16415-16430

Released	2015-05-27
Method	X-RAY DIFFRACTION 1.899 Å
Organisms	Podospora anserina
Macromolecule	Putative SAM-dependent O-methyltranferase (protein)
Unique Ligands	MG, PG4, PO4, SAM

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4YMH \| pdb_00004ymh	Download File View File

Crystal structure of SAH-bound Podospora anserina methyltransferase PaMTH1

Kudlinzki, D., Linhard, V.L., Chatterjee, D., Saxena, K., Sreeramulu, S., Schwalbe, H.

(2015) J Biological Chem 290: 16415-16430

Released	2015-05-27
Method	X-RAY DIFFRACTION 1.876 Å
Organisms	Podospora anserina
Macromolecule	Putative SAM-dependent O-methyltranferase (protein)
Unique Ligands	PEG, SAH

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5H8A \| pdb_00005h8a	Download File View File

Mmi1 YTH domain

Chatterjee, D., Goldgur, Y., Shuman, S.

(2016) RNA 22: 1011-1025

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.751 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	YTH domain-containing protein mmi1 (protein)

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5HFZ \| pdb_00005hfz	Download File View File

Mmi1 YTH domain

Chatterjee, D., Goldgur, Y., Shuman, S.

(2016) RNA 22: 1011-1025

Released	2016-02-10
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	YTH domain-containing protein mmi1 (protein)

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5UJ0 \| pdb_00005uj0	Download File View File

Structure of T4Pnkp 3' phosphatase covalently bound to BeF3

Shuman, S., Chatterjee, D.

To be published

Released	2017-02-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	Polynucleotide kinase (protein)
Unique Ligands	GOL, MG

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5XJK \| pdb_00005xjk	Download File View File

NMR Structure and Localization of a Large Fragment of the SARS-CoV Fusion Protein: Implications in Viral Cell Fusion

Bhattacharjya, S., Chatterjee, D.

(2017) Biochim Biophys Acta 1860: 407-415

Released	2017-09-06
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Spike protein S2 (protein)

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5XR1 \| pdb_00005xr1	Download File View File

Structure of FLN IG21 domain in complex with C-terminal peptide of beta-2

Chatterjee, D., Lu, L.Z., Bhattacharjya, S.

To be published

Released	2018-06-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-terminal peptide of Integrin beta-2,Filamin-A IG21 domain (protein)

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6Q8K \| pdb_00006q8k	Download File View File

CLK1 with bound pyridoquinazoline

Schroeder, M., Tazarki, H., Zeinyeh, W., Esvan, Y.J., Khiari, J., Joesselin, B., Bach, S., Ruchaud, S., Anizon, F., Giraud, F., Moreau, P., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

(2019) Eur J Med Chem 166: 304-317

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein kinase CLK1 (protein)
Unique Ligands	EDO, FG9

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6Q8P \| pdb_00006q8p	Download File View File

Structure of CLK1 with bound N-methyl-10-nitropyrido[3,4-g]quinazolin-2-amine

Joerger, A.C., Chatterjee, D., Schroeder, M., Tazarki, H., Zeinyeh, W., Esvan, Y.J., Khiari, J., Josselin, B., Baratte, B., Bach, S., Ruchaud, S., Anizon, F., Giraud, F., Moreau, P., Knapp, S., Structural Genomics Consortium (SGC)

(2019) Eur J Med Chem 166: 304-317

Released	2019-02-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein kinase CLK1 (protein)
Unique Ligands	HQB, K

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6TSZ \| pdb_00006tsz	Download File View File

The ULK4 Pseudokinase Domain Bound To ATPgammaS

Preuss, F., Chatterjee, D., Mathea, S., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Knapp, S.

(2020) Structure 28: 1184

Released	2020-01-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase ULK4 (protein)
Unique Ligands	AGS

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6TU9 \| pdb_00006tu9	Download File View File

The ROR1 Pseudokinase Domain Bound To Ponatinib

Mathea, S., Preuss, F., Chatterjee, D., Niininen, W., Ungureanu, D., Shin, D., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S.

(2020) Mol Cell 79: 390-405.e7

Released	2020-01-22
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Inactive tyrosine-protein kinase transmembrane receptor ROR1 (protein)
Unique Ligands	0LI

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6TUA \| pdb_00006tua	Download File View File

The RYK Pseudokinase Domain

Mathea, S., Chatterjee, D., Preuss, F., Shin, D., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S.

(2020) Mol Cell 79: 390-405.e7

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase RYK (protein)
Unique Ligands	SO4

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6ZIW \| pdb_00006ziw	Download File View File

The IRAK3 Pseudokinase Domain Bound To ATPgammaS

Mathea, S., Chatterjee, D., Preuss, F., Kraemer, A., Knapp, S.

To be published

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-1 receptor-associated kinase 3 (protein)
Unique Ligands	AGS, SO4