6ZIW | pdb_00006ziw

The IRAK3 Pseudokinase Domain Bound To ATPgammaS

• PDB DOI: https://doi.org/10.2210/pdb6ZIW/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 


• Deposited: 2020-06-26 Released: 2020-07-22 
• Deposition Author(s): Mathea, S., Chatterjee, D., Preuss, F., Kraemer, A., Knapp, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.18 Å
• R-Value Free: 
  0.250 (Depositor), 0.255 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.227 (DCC) 
• R-Value Observed: 
  0.218 (Depositor) 

Starting Model: experimental

Literature

The IRAK3 Pseudokinase Domain Bound To ATPgammaS

Mathea, S., Chatterjee, D., Preuss, F., Kraemer, A., Knapp, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 37.19 kDa 
• Atom Count: 2,171 
• Modeled Residue Count: 267 
• Deposited Residue Count: 316 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-1 receptor-associated kinase 3	A [auth I]	316	Homo sapiens	Mutation(s): 1  Gene Names: IRAK3 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y616 (Homo sapiens) Explore Q9Y616  Go to UniProtKB:  Q9Y616
PHAROS:  Q9Y616 GTEx:  ENSG00000090376

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AGS (Subject of Investigation/LOI)	B [auth I]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C10 H16 N5 O12 P3 S NLTUCYMLOPLUHL-KQYNXXCUSA-N
SO4	C [auth I], D [auth I]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.18 Å
• R-Value Free:  0.250 (Depositor), 0.255 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.227 (DCC) 
• R-Value Observed: 0.218 (Depositor) 

Space Group: I 4₁ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 190.45	α = 90
b = 190.45	β = 90
c = 190.45	γ = 90

Software Package:

Software Name	Purpose
xia2	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-07-22 
Deposition Author(s): Mathea, S., Chatterjee, D., Preuss, F., Kraemer, A., Knapp, S.

Revision History  

• Version 1.0: 2020-07-22
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Database references, Refinement description