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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pomes, A."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Mus musculus (12)
	Dermatophagoides pteronyssinus (9)
	Blattella germanica (4)
	Homo sapiens (4)
	Canis lupus familiaris (2)
	Dermatophagoides farinae (2)
	Gallus gallus (1)

Taxonomy

Eukaryota (23)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (4)
	2.5 - 3.0 (9)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (10)
	2020 - 2024 (4)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Asymmetric (20)
	Cyclic (4)
	Helical (1)

SCOP Classification

	All beta proteins (14)
	Artifacts (9)

AllSelected

1 to 23 of 23 Structures

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1YG9 \| pdb_00001yg9	Download File View File

The structure of mutant (N93Q) of bla g 2

Li, M., Gustchina, A., Wuenschmann, S., Pomes, A., Wlodawer, A.

(2005) J Mol Biology 348: 433-444

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Blattella germanica
Macromolecule	Aspartic protease Bla g 2 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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2NR6 \| pdb_00002nr6	Download File View File

Crystal structure of the complex of antibody and the allergen Bla g 2

Li, M., Gustchina, A., Wlodawer, A., Pomes, A., Wunschmann, S.

(2008) J Biological Chem 283: 22806-22814

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Blattella germanica Mus musculus
Macromolecule	Antibody heavy chain (protein) Antibody light chain (protein) Aspartic protease Bla g 2 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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3LIZ \| pdb_00003liz	Download File View File

crystal structure of bla g 2 complexed with Fab 4C3

Li, M., Gustchina, A., Glesner, J., Wunschmann, S., Pomes, A., Wlodawer, A.

(2011) PLoS One 6: e22223-e22223

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Blattella germanica Mus musculus
Macromolecule	4C3 monoclonal antibody Heavy Chain (protein) 4C3 monoclonal antibody Light Chain (protein) Aspartic protease Bla g 2 (protein)
Unique Ligands	CD, EDO, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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3MQ1 \| pdb_00003mq1	Download File View File

Crystal Structure of Dust Mite Allergen Der p 5

Mueller, G.A., Gosavi, R.A., Krahn, J.M., Edwards, L.L., Cuneo, M.J., Glesner, J., Pomes, A., Chapman, M.D., London, R.E., Pedersen, L.C.

(2010) J Biological Chem 285: 25394-25401

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Dermatophagoides pteronyssinus
Macromolecule	Mite allergen Der p 5 (protein)
Unique Ligands	MPD, MRD, PO4

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3RVT \| pdb_00003rvt	Download File View File

Structure of 4C1 Fab in P212121 space group

Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

(2012) J Biological Chem 287: 7388-7398

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	Fab fragment of 4C1 antibody - heavy chain (protein) Fab fragment of 4C1 antibody - light chain (protein)

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3RVU \| pdb_00003rvu	Download File View File

Structure of 4C1 Fab in C2221 space group

Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

(2012) J Biological Chem 287: 7388-7398

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	4C1 Fab - heavy chain (protein) 4C1 Fab - light chain (protein)

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4OUO \| pdb_00004ouo	Download File View File

anti-Bla g 1 scFv

Mueller, G.A., Ankney, J.A., Glesner, J., Khurana, T., Edwards, L.L., Pedersen, L.C., Perera, L., Slater, J.E., Pomes, A., London, R.E.

(2014) Mol Immunol 59: 200-207

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	anti Bla g 1 scFv (protein)
Unique Ligands	CL, SO4

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4POZ \| pdb_00004poz	Download File View File

Fab fragment of Der p 1 specific antibody 10B9

Osinski, T., Majorek, K.A., Pomes, A., Offermann, L.R., Osinski, S., Glesner, J., Vailes, L.D., Chapman, M.D., Minor, W., Chruszcz, M.

(2015) J Immunol 195: 307-316

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	heavy chain of Fab fragment of 10B9 antibody (protein) light chain of Fab fragment of 10B9 antibody (protein)

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4RLD \| pdb_00004rld	Download File View File

Crystal structure of kkf mutant of bla G 2 protein

Li, M., Gustchina, A., Pomes, A., Wlodawer, A.

To be published

Released	2015-10-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Blattella germanica
Macromolecule	Aspartic protease Bla g 2 (protein)
Unique Ligands	ZN
Unique branched monosaccharides	NAG

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4ZCE \| pdb_00004zce	Download File View File

Crystal Structure of the dust mite allergen Der p 23 from Dermatophagoides pteronyssinus

Pedersen, L.C., Mueller, G.A., Randall, T.A., Glesner, J., Perera, L., Edwards, L.L., Chapman, M.D., London, R.E., Pomes, A.

(2016) Clin Exp Allergy 46: 365-376

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Dermatophagoides pteronyssinus
Macromolecule	Dust mite allergen (protein)
Unique Ligands	EDO

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5VCN \| pdb_00005vcn	Download File View File

THE CRYSTAL STRUCTURE OF DER P 1 ALLERGEN COMPLEXED WITH FAB FRAGMENT OF MAB 5H8

Osinski, T., Majorek, K.A., Pomes, A., Offermann, L.R., Osinski, S., Glesner, J., Vailes, L.D., Chapman, M.D., Minor, W., Chruszcz, M.

(2015) J Immunol 195: 307-316

Released	2017-04-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Dermatophagoides pteronyssinus Mus musculus
Macromolecule	HEAVY CHAIN OF FAB FRAGMENT OF MAB 5H8 (protein) LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8 (protein) PEPTIDASE 1 (protein)
Unique Ligands	CA, EDO, NAG, PO4

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5VCO \| pdb_00005vco	Download File View File

THE CRYSTAL STRUCTURE OF DER P 1 ALLERGEN COMPLEXED WITH FAB FRAGMENT OF MAB 10B9

Osinski, T., Majorek, K.A., Pomes, A., Offermann, L.R., Osinski, S., Glesner, J., Vailes, L.D., Chapman, M.D., Minor, W., Chruszcz, M.

(2015) J Immunol 195: 307-316

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Dermatophagoides pteronyssinus Mus musculus
Macromolecule	HEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY (protein) LIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY (protein) PEPTIDASE 1 (protein)
Unique Ligands	CA, NAG

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5VPG \| pdb_00005vpg	Download File View File

CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1

Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

(2012) J Biological Chem 287: 7388

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Dermatophagoides pteronyssinus Mus musculus
Macromolecule	Der p 1 allergen (protein) FAB 4C1 - HEAVY CHAIN (protein) FAB 4C1 - LIGHT CHAIN (protein)
Unique Ligands	CA, EDO, NAG

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5VPH \| pdb_00005vph	Download File View File

CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1

Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

(2012) J Biological Chem 287: 7388

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dermatophagoides pteronyssinus Mus musculus
Macromolecule	Der p 1 allergen (protein) FAB 4C1 - HEAVY CHAIN (protein) FAB 4C1 - LIGHT CHAIN (protein)
Unique Ligands	CA, EDO

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5VPK \| pdb_00005vpk	Download File View File

CRYSTAL STRUCTURE OF MITE ALLERGEN DER F 1

Chruszcz, M., Chapman, M.D., Vailes, L.D., Pomes, A., Minor, W.

(2009) J Mol Biology 386: 520

Released	2017-05-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dermatophagoides farinae
Macromolecule	Der f 1 variant (protein)
Unique Ligands	NAG, SO4

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5VPL \| pdb_00005vpl	Download File View File

CRYSTAL STRUCTURE OF DER F 1 COMPLEXED WITH FAB 4C1

Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

(2012) J Biological Chem 287: 7388

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Dermatophagoides farinae Mus musculus
Macromolecule	4C1 - HEAVY CHAIN (protein) 4C1 - LIGHT CHAIN (protein) Der f 1 variant (protein)
Unique Ligands	CA, EDO, NAG

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6OY4 \| pdb_00006oy4	Download File View File

Crystal structure of complex between recombinant Der p 2.0103 and Fab fragment of 7A1

Kapingidza, A.B., Offermann, L.R., Glesner, J., Wunschmann, S., Vailes, L.D., Chapman, M.D.C., Pomes, A., Chruszcz, M.

(2019) J Immunol 203: 2545-2556

Released	2019-08-28
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Dermatophagoides pteronyssinus Mus musculus
Macromolecule	Der p 2 variant 3 (protein) Fab fragment of IgG, HEAVY CHAIN (protein) Fab fragment of IgG, LIGHT CHAIN (protein)
Unique Ligands	SO4

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7MLH \| pdb_00007mlh	Download File View File

Crystal structure of human IgE (2F10) in complex with Der p 2.0103

Khatri, K., Kapingidza, A.B., Richardson, C.M., Vailes, L.D., Wunschmann, S., Dolamore, C., Chapman, M.D., Smith, S.A., Pomes, A., Chruszcz, M.

(2022) PNAS Nexus 1: pgac054-pgac054

Released	2022-05-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Dermatophagoides pteronyssinus Homo sapiens
Macromolecule	Der p 2 variant 3 (protein) IgE Heavy chain (protein) IgE Light Chain (protein)
Unique Ligands	CL, SO4

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8VK1 \| pdb_00008vk1	Download File View File

X-ray crystal structure of human IgE 4C8 Fab complex with Der p 2.0103

Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.

(2024) J Allergy Clin Immunol 154: 447-457

Released	2024-06-19
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Dermatophagoides pteronyssinus Homo sapiens
Macromolecule	Der p 2 variant 3 (protein) IgE 4C8 heavy chain (protein) IgE 4C8 light chain (protein)

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8VK2 \| pdb_00008vk2	Download File View File

X-ray crystal structure of human IgE 4C8 Fab

Khatri, K., Ball, A., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.

(2024) J Allergy Clin Immunol 154: 447-457

Released	2024-06-19
Method	X-RAY DIFFRACTION 2.508 Å
Organisms	Homo sapiens
Macromolecule	IgE 4C8 heavy chain (protein) IgE 4C8 light chain (protein)

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8VQF \| pdb_00008vqf	Download File View File

X-ray crystal structure of natural Can f 1 in complex with human IgE 1J11 Fab

Khatri, K., Ball, A., Richardson, C.M., Smith, S.A., Champan, M.D., Pomes, A., Chruszcz, M.

To be published

Released	2025-01-22
Method	X-RAY DIFFRACTION 3.109 Å
Organisms	Canis lupus familiaris Homo sapiens
Macromolecule	IgE 1J11 Heavy chain (protein) IgE 1J11 Light chain (protein) Major allergen Can f 1 (protein)
Unique Ligands	NAG, SO4