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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Li, Q."

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Search Summary

This query matches 167 Structures.

Refinements

Structure Determination Methodology

experimental (167)

Scientific Name of Source Organism

	Homo sapiens (39)
	synthetic construct (12)
	Saccharomyces cerevisiae (9)
	Bacillus subtilis (6)
	Thermococcus gorgonarius (6)
	Pyrococcus abyssi (5)
	Agrobacterium fabrum str. C58 (4)
	Agrobacterium tumefaciens (4)
	Catenulispora acidiphila DSM 44928 (4)
	Cyanophage S-2L (4)

More...

Taxonomy

	Eukaryota (68)
	Bacteria (59)
	Archaea (23)
	Duplodnaviria (12)
	other sequences (12)
	Riboviria (7)

Experimental Method

	X-RAY DIFFRACTION (165)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (164)
	DNA (13)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (9)
	1.5 - 2.0 (34)
	2.0 - 2.5 (41)
	2.5 - 3.0 (40)
	3.0 - 3.5 (22)
	3.5 - 4.0 (17)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (7)
	2010 - 2014 (26)
	2015 - 2019 (43)
	2020 - 2024 (79)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (27)
	Oxidoreductases (16)
	Hydrolases (9)
	Lyases (5)
	Ligases (3)
	Isomerases (2)

Membrane Protein Annotation

	MemProtMD (12)
	PDBTM (12)
	mpstruc (10)
	OPM (8)

Symmetry Type

	Asymmetric (101)
	Cyclic (58)
	Dihedral (13)

SCOP Classification

	All beta proteins (8)
	Artifacts (9)
	All alpha proteins (10)
	Alpha and beta proteins (a/b) (11)
	Alpha and beta proteins (a+b) (4)
	Multi-domain proteins (alpha and beta) (7)
	Small proteins (6)

AllSelected

1 to 25 of 167 Structures

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1EYX \| pdb_00001eyx	Download File View File

CRYSTAL STRUCTURE OF R-PHYCOERYTHRIN AT 2.2 ANGSTROMS

Contreras-Martel, C., Legrand, P., Piras, C., Vernede, X., Martinez-Oyanedel, J., Bunster, M., Fontecilla-Camps, J.C.

(2001) Acta Crystallogr D Biol Crystallogr 57: 52-60

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Agarophyton chilense
Macromolecule	R-PHYCOERYTHRIN (protein)
Unique Ligands	CYC, PUB, SO4

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1HFE \| pdb_00001hfe	Download File View File

1.6 A RESOLUTION STRUCTURE OF THE FE-ONLY HYDROGENASE FROM DESULFOVIBRIO DESULFURICANS

Nicolet, Y., Piras, C., Legrand, P., Hatchikian, E.C., Fontecilla-Camps, J.C.

(1999) Structure 7: 13-23

Released	1999-04-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Nitratidesulfovibrio vulgaris str. Hildenborough
Macromolecule	PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1) (LARGER SUBUNIT)) (protein) PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1) (SMALLER SUBUNIT)) (protein)
Unique Ligands	CMO, CYN, CYS, FE2, PDT, SF4, ZN

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1MRQ \| pdb_00001mrq	Download File View File

Crystal structure of human 20alpha-HSD in ternary complex with NADP and 20alpha-hydroxy-progesterone

Couture, J.F., Legrand, P., Cantin, L., Luu-The, V., Labrie, F., Breton, R.

(2003) J Mol Biology 331: 593-604

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C1 (protein)
Unique Ligands	BME, NAP, STR

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1OAO \| pdb_00001oao	Download File View File

NiZn[Fe4S4] and NiNi[Fe4S4] clusters in closed and open alpha subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase

Darnault, C., Volbeda, A., Kim, E.J., Legrand, P., Vernede, X., Lindahl, P.A., Fontecilla-Camps, J.C.

(2003) Nat Struct Biol 10: 271

Released	2003-04-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Moorella thermoacetica
Macromolecule	CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT ALPHA (protein) CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT BETA (protein)
Unique Ligands	ACT, BCT, FE2, FOR, GOL, NI, SF4, SO4, SX, XCC, ZN

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1Q13 \| pdb_00001q13	Download File View File

Crystal structure of rabbit 20alpha hyroxysteroid dehydrogenase in ternary complex with NADP and testosterone

Couture, J.-F., Cantin, L., Legrand, P., Luu-The, V., Labrie, F., Breton, R.

(2004) J Mol Biology 339: 89-102

Released	2004-11-16
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Prostaglandin-E2 9-reductase (protein)
Unique Ligands	NAP, SO4, TES

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1Q5M \| pdb_00001q5m	Download File View File

Binary complex of rabbit 20alpha-hydroxysteroid dehydrogenase with NADPH

Couture, J.F., Legrand, P., Cantin, L., Labrie, F., Luu-The, V., Breton, R.

(2004) J Mol Biology 339: 89-102

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Prostaglandin-E2 9-reductase (protein)
Unique Ligands	NDP, SO4

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1XJB \| pdb_00001xjb	Download File View File

Crystal structure of human type 3 3alpha-hydroxysteroid dehydrogenase in complex with NADP(H), citrate and acetate molecules

Couture, J.-F., Pereira de Jesus-Tran, K., Roy, A.-M., Legrand, P., Cantin, L., Cote, P.-L., Luu-The, V., Labrie, F., Breton, R.

(2005) Protein Sci 14: 1485-1497

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C2 (protein)
Unique Ligands	ACT, BME, CIT, EDO, NAP, SO4

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2F1K \| pdb_00002f1k	Download File View File

Crystal structure of Synechocystis arogenate dehydrogenase

Legrand, P., Dumas, R., Seux, M., Rippert, P., Ravelli, R., Ferrer, J.-L., Matringe, M.

(2006) Structure 14: 767-776

Released	2006-05-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	prephenate dehydrogenase (protein)
Unique Ligands	NAP, TRS

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2J04 \| pdb_00002j04	Download File View File

The tau60-tau91 subcomplex of yeast transcription factor IIIC

Mylona, A., Fernandez-Tornero, C., Legrand, P., Muller, C.W.

(2006) Mol Cell 24: 221

Released	2006-10-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HYPOTHETICAL PROTEIN YPL007C (protein) YDR362CP (protein)

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2PNU \| pdb_00002pnu	Download File View File

Crystal structure of human androgen receptor ligand-binding domain in complex with EM-5744

Cantin, L., Faucher, F., Couture, J.F., Pereira de Jesus-Tran, K., Legrand, P., Ciobanu, C.L., Singh, S.M., Labrie, F., Breton, R.

(2007) J Biological Chem 282: 30910-30919

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Androgen receptor (protein)
Unique Ligands	DTT, ENM, MES, SO4

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2UY1 \| pdb_00002uy1	Download File View File

CRYSTAL STRUCTURE OF CSTF-77

Legrand, P., Pinaud, N., Minvielle-Sebastia, L., Fribourg, S.

(2007) Nucleic Acids Res 35: 4515

Released	2007-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Encephalitozoon cuniculi
Macromolecule	CLEAVAGE STIMULATION FACTOR 77 (protein)

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2V7F \| pdb_00002v7f	Download File View File

Structure of P. abyssi RPS19 protein

Gregory, L.A., Aguissa-Toure, A.H., Pinaud, N., Legrand, P., Gleizes, P.E., Fribourg, S.

(2007) Nucleic Acids Res 35: 5913

Released	2007-09-11
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Pyrococcus abyssi
Macromolecule	RPS19E SSU RIBOSOMAL PROTEIN S19E (protein)
Unique Ligands	CL

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2V94 \| pdb_00002v94	Download File View File

Crystal structure of P. abyssi RPS24

Legrand, P., Pinaud, N., Gleizes, P.E., Fribourg, S.

(2008) Hum Mol Genet 17: 1253

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus abyssi
Macromolecule	30S RIBOSOMAL PROTEIN S24E (protein)

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2X74 \| pdb_00002x74	Download File View File

Human foamy virus integrase - catalytic core.

Rety, S., Delelis, O., Rezabkova, L., Dubanchet, B., Legrand, P., Silhan, J., Lewit-Bentley, A.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 881

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Human spumaretrovirus
Macromolecule	INTEGRASE (protein)

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2X78 \| pdb_00002x78	Download File View File

Human foamy virus integrase - catalytic core.

Rety, S., Delelis, O., Rezabkova, L., Dubanchet, B., Legrand, P., Silhan, J., Lewit-Bentley, A.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 881

Released	2010-08-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human spumaretrovirus
Macromolecule	INTEGRASE (protein)

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2XUB \| pdb_00002xub	Download File View File

Human RPC62 subunit structure

Lefevre, S., Legrand, P., Fribourg, S.

(2011) Nat Struct Mol Biol 18: 352

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3 (protein)

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2XV4 \| pdb_00002xv4	Download File View File

Structure of Human RPC62 (partial)

Lefevre, S., Legrand, P., Fribourg, S.

(2011) Nat Struct Mol Biol 18: 352

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3 (protein)
Unique Ligands	PO4

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2YGV \| pdb_00002ygv	Download File View File

Conserved N-terminal domain of the yeast Histone Chaperone Asf1 in complex with the C-terminal fragment of Rad53

Jiao, Y., Seeger, K., Murciano, B., Ledu, M.H., Charbonnier, J.B., Legrand, P., Lautrette, A., Gaubert, A., Mousson, F., Guerois, R., Mann, C., Ochsenbein, F.

(2012) Proc Natl Acad Sci U S A 109: 2866

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HISTONE CHAPERONE ASF1 (protein) SERINE/THREONINE-PROTEIN KINASE RAD53 (protein)
Unique Ligands	GOL, SO4

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2YOE \| pdb_00002yoe	Download File View File

X-ray structure of a pentameric ligand gated ion channel from Erwinia chrysanthemi (ELIC) in complex with GABA and flurazepam

Spurny, R., Brams, M., Nury, H., Legrand, P., Ulens, C.

(2012) Proc Natl Acad Sci U S A 109: E3028

Released	2012-10-31
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Dickeya chrysanthemi
Macromolecule	CYS-LOOP LIGAND-GATED ION CHANNEL (protein)
Unique Ligands	ABU, FL7

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3CAO \| pdb_00003cao	Download File View File

OXIDISED STRUCTURE OF THE ACIDIC CYTOCHROME C3 FROM DESULFOVIBRIO AFRICANUS

Norager, S., Legrand, P., Pieulle, L., Hatchikian, C., Roth, M.

(1999) J Mol Biology 290: 881-902

Released	2000-07-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Desulfocurvibacter africanus
Macromolecule	CYTOCHROME C3 (protein)
Unique Ligands	ARS, HEM, ZN

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3CAR \| pdb_00003car	Download File View File

REDUCED STRUCTURE OF THE ACIDIC CYTOCHROME C3 FROM DESULFOVIBRIO AFRICANUS

Norager, S., Legrand, P., Pieulle, L., Hatchikian, C., Roth, M.

(1999) J Mol Biology 290: 881-902

Released	2000-07-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Desulfocurvibacter africanus
Macromolecule	CYTOCHROME C3 (protein)
Unique Ligands	ARS, HEM, ZN

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3Q4F \| pdb_00003q4f	Download File View File

Crystal structure of xrcc4/xlf-cernunnos complex

Ropars, V., Legrand, P., Charbonnier, J.B.

(2011) Proc Natl Acad Sci U S A 108: 12663-12668

Released	2011-08-03
Method	X-RAY DIFFRACTION 5.5 Å
Organisms	Homo sapiens
Macromolecule	DNA repair protein XRCC4 (protein) Non-homologous end-joining factor 1 (protein)

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3U6X \| pdb_00003u6x	Download File View File

Phage TP901-1 baseplate tripod

Veesler, D., Spinelli, S., Mahony, J., Lichiere, J., Blangy, S., Bricogne, G., Legrand, P., Ortiz-Lombardia, M., Campanacci, V.I., van Sinderen, D., Cambillau, C.

(2012) Proc Natl Acad Sci U S A 109: 8954-8958

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	BPP (protein) ORF48 (protein)
Unique Ligands	BR

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3UH8 \| pdb_00003uh8	Download File View File

N-terminal domain of phage TP901-1 ORF48

Veesler, D., Spinelli, S., Mahony, J., Lichiere, J., Blangy, S., Bricogne, G., Legrand, P., Ortiz-Lombardia, M., Campanacci, V.I., van Sinderen, D., Cambillau, C.

(2012) Proc Natl Acad Sci U S A 109: 8954-8958

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus phage TP901-1
Macromolecule	ORF48 (protein)

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3ZVY \| pdb_00003zvy	Download File View File

PHD finger of human UHRF1 in complex with unmodified histone H3 N- terminal tail

Lallous, N., Birck, C., Mc Ewen, A.G., Legrand, P., Samama, J.P.

(2011) PLoS One 6: 27599

Released	2011-12-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	E3 UBIQUITIN-PROTEIN LIGASE UHRF1 (protein) HISTONE H3.1 (protein)
Unique Ligands	CL, TRS, ZN

1 to 25 of 167 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EYX | pdb_00001eyx

1HFE | pdb_00001hfe

1MRQ | pdb_00001mrq

1OAO | pdb_00001oao

1Q13 | pdb_00001q13

1Q5M | pdb_00001q5m

1XJB | pdb_00001xjb

2F1K | pdb_00002f1k

2J04 | pdb_00002j04

2PNU | pdb_00002pnu

2UY1 | pdb_00002uy1

2V7F | pdb_00002v7f

2V94 | pdb_00002v94

2X74 | pdb_00002x74

2X78 | pdb_00002x78

2XUB | pdb_00002xub

2XV4 | pdb_00002xv4

2YGV | pdb_00002ygv

2YOE | pdb_00002yoe

3CAO | pdb_00003cao

3CAR | pdb_00003car

3Q4F | pdb_00003q4f

3U6X | pdb_00003u6x

3UH8 | pdb_00003uh8

3ZVY | pdb_00003zvy