8XVH

Cryo-EM structure of ETBR bound with Endothelin1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structural basis of antagonist selectivity in endothelin receptors.

Hou, J.Liu, S.Zhang, X.Tu, G.Wu, L.Zhang, Y.Yang, H.Li, X.Liu, J.Jiang, L.Tan, Q.Bai, F.Liu, Z.Miao, C.Hua, T.Luo, Z.

(2024) Cell Discov 10: 79-79

  • DOI: https://doi.org/10.1038/s41421-024-00705-9
  • Primary Citation of Related Structures:  
    8XVE, 8XVH, 8XVI, 8XVJ, 8XVK, 8XVL

  • PubMed Abstract: 

    Endothelins and their receptors, ET A and ET B , play vital roles in maintaining vascular homeostasis. Therapeutically targeting endothelin receptors, particularly through ET A antagonists, has shown efficacy in treating pulmonary arterial hypertension (PAH) and other cardiovascular- and renal-related diseases. Here we present cryo-electron microscopy structures of ET A in complex with two PAH drugs, macitentan and ambrisentan, along with zibotentan, a selective ET A antagonist, respectively. Notably, a specialized anti-ET A antibody facilitated the structural elucidation. These structures, together with the active-state structures of ET-1-bound ET A and ET B , and the agonist BQ3020-bound ET B , in complex with G q , unveil the molecular basis of agonist/antagonist binding modes in endothelin receptors. Key residues that confer antagonist selectivity to endothelin receptors were identified along with the activation mechanism of ET A . Furthermore, our results suggest that ECL2 in ET A can serve as an epitope for antibody-mediated receptor antagonism. Collectively, these insights establish a robust theoretical framework for the rational design of small-molecule drugs and antibodies with selective activity against endothelin receptors.


  • Organizational Affiliation

    Cardiac Intensive Care Center, Zhongshan Hospital, Fudan University, Shanghai, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short261Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1346Homo sapiensMutation(s): 0 
Gene Names: GNB1
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Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35D [auth N]157Lama glamaMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Endothelin-1E [auth T]21Homo sapiensMutation(s): 0 
Gene Names: EDN1
Membrane Entity: Yes 
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GTEx:  ENSG00000078401 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Exo-alpha-sialidase,Endothelin receptor type BF [auth R]837Clostridium perfringensHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: nanHEDNRBETRB
EC: 3.2.1.18
Membrane Entity: Yes 
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Find proteins for P24530 (Homo sapiens)
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GTEx:  ENSG00000136160 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-28
    Type: Initial release