8XVE

Cryo-EM structure of ETBR bound with BQ3020


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of antagonist selectivity in endothelin receptors.

Hou, J.Liu, S.Zhang, X.Tu, G.Wu, L.Zhang, Y.Yang, H.Li, X.Liu, J.Jiang, L.Tan, Q.Bai, F.Liu, Z.Miao, C.Hua, T.Luo, Z.

(2024) Cell Discov 10: 79-79

  • DOI: https://doi.org/10.1038/s41421-024-00705-9
  • Primary Citation of Related Structures:  
    8XVE, 8XVH, 8XVI, 8XVJ, 8XVK, 8XVL

  • PubMed Abstract: 

    Endothelins and their receptors, ET A and ET B , play vital roles in maintaining vascular homeostasis. Therapeutically targeting endothelin receptors, particularly through ET A antagonists, has shown efficacy in treating pulmonary arterial hypertension (PAH) and other cardiovascular- and renal-related diseases. Here we present cryo-electron microscopy structures of ET A in complex with two PAH drugs, macitentan and ambrisentan, along with zibotentan, a selective ET A antagonist, respectively. Notably, a specialized anti-ET A antibody facilitated the structural elucidation. These structures, together with the active-state structures of ET-1-bound ET A and ET B , and the agonist BQ3020-bound ET B , in complex with G q , unveil the molecular basis of agonist/antagonist binding modes in endothelin receptors. Key residues that confer antagonist selectivity to endothelin receptors were identified along with the activation mechanism of ET A . Furthermore, our results suggest that ECL2 in ET A can serve as an epitope for antibody-mediated receptor antagonism. Collectively, these insights establish a robust theoretical framework for the rational design of small-molecule drugs and antibodies with selective activity against endothelin receptors.


  • Organizational Affiliation

    Cardiac Intensive Care Center, Zhongshan Hospital, Fudan University, Shanghai, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short261Homo sapiensMutation(s): 0 
EC: 3.6.5
Membrane Entity: Yes 
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PHAROS:  P63092
GTEx:  ENSG00000087460 
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UniProt GroupP63092
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1346Homo sapiensMutation(s): 0 
Gene Names: GNB1
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Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35D [auth N]157Lama glamaMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
BQ3020E [auth P]16Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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GTEx:  ENSG00000078401 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Exo-alpha-sialidase,Endothelin receptor type BF [auth R]837Clostridium perfringensHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: nanHEDNRBETRB
EC: 3.2.1.18
Membrane Entity: Yes 
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Find proteins for Q59310 (Clostridium perfringens)
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Find proteins for P24530 (Homo sapiens)
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PHAROS:  P24530
GTEx:  ENSG00000136160 
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UniProt GroupsP24530Q59310
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-28
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Structure summary