8XVJ

Cryo-EM structure of ETAR bound with Macitentan


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structural basis of antagonist selectivity in endothelin receptors.

Hou, J.Liu, S.Zhang, X.Tu, G.Wu, L.Zhang, Y.Yang, H.Li, X.Liu, J.Jiang, L.Tan, Q.Bai, F.Liu, Z.Miao, C.Hua, T.Luo, Z.

(2024) Cell Discov 10: 79-79

  • DOI: https://doi.org/10.1038/s41421-024-00705-9
  • Primary Citation of Related Structures:  
    8XVE, 8XVH, 8XVI, 8XVJ, 8XVK, 8XVL

  • PubMed Abstract: 

    Endothelins and their receptors, ET A and ET B , play vital roles in maintaining vascular homeostasis. Therapeutically targeting endothelin receptors, particularly through ET A antagonists, has shown efficacy in treating pulmonary arterial hypertension (PAH) and other cardiovascular- and renal-related diseases. Here we present cryo-electron microscopy structures of ET A in complex with two PAH drugs, macitentan and ambrisentan, along with zibotentan, a selective ET A antagonist, respectively. Notably, a specialized anti-ET A antibody facilitated the structural elucidation. These structures, together with the active-state structures of ET-1-bound ET A and ET B , and the agonist BQ3020-bound ET B , in complex with G q , unveil the molecular basis of agonist/antagonist binding modes in endothelin receptors. Key residues that confer antagonist selectivity to endothelin receptors were identified along with the activation mechanism of ET A . Furthermore, our results suggest that ECL2 in ET A can serve as an epitope for antibody-mediated receptor antagonism. Collectively, these insights establish a robust theoretical framework for the rational design of small-molecule drugs and antibodies with selective activity against endothelin receptors.


  • Organizational Affiliation

    Cardiac Intensive Care Center, Zhongshan Hospital, Fudan University, Shanghai, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
anti-BRIL Fab Heavy chainA [auth H]266Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
anti-Fab NanobodyB [auth K]136synthetic constructMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
anti-BRIL Fab Light chainC [auth L]235Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Endoglucanase H,Endothelin-1 receptor,Soluble cytochrome b562D [auth R]783Acetivibrio thermocellus ATCC 27405Homo sapiensEscherichia coliMutation(s): 0 
Gene Names: celHCthe_1472EDNRAETAETRAcybC
EC: 3.2.1.4
UniProt & NIH Common Fund Data Resources
Find proteins for P25101 (Homo sapiens)
Explore P25101 
Go to UniProtKB:  P25101
PHAROS:  P25101
GTEx:  ENSG00000151617 
Find proteins for P0ABE7 (Escherichia coli)
Explore P0ABE7 
Go to UniProtKB:  P0ABE7
Find proteins for P16218 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372))
Explore P16218 
Go to UniProtKB:  P16218
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UniProt GroupsP0ABE7P25101P16218
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1D5I (Subject of Investigation/LOI)
Query on A1D5I

Download Ideal Coordinates CCD File 
E [auth R]6-[2-(5-bromanylpyrimidin-2-yl)oxyethoxy]-5-(4-bromophenyl)-~{N}-(propylsulfamoyl)pyrimidin-4-amine
C19 H20 Br2 N6 O4 S
JGCMEBMXRHSZKX-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedChina--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-28
    Type: Initial release