Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina
Si, L., Li, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein D1 | A [auth a], R [auth A] | 328 | Rhodomonas salina | Mutation(s): 0  EC: 1.10.3.9 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVT2 (Rhodomonas salina) Explore A6MVT2  Go to UniProtKB:  A6MVT2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVT2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP47 reaction center protein | B [auth b], S [auth B] | 509 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MW31 (Rhodomonas salina) Explore A6MW31  Go to UniProtKB:  A6MW31 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MW31 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP43 reaction center protein | C [auth c], T [auth C] | 487 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVR2 (Rhodomonas salina) Explore A6MVR2  Go to UniProtKB:  A6MVR2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVR2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II D2 protein | D [auth d], U [auth D] | 351 | Rhodomonas salina | Mutation(s): 0  EC: 1.10.3.9 Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVR3 (Rhodomonas salina) Explore A6MVR3  Go to UniProtKB:  A6MVR3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVR3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit alpha | E [auth e], V [auth E] | 84 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVV5 (Rhodomonas salina) Explore A6MVV5  Go to UniProtKB:  A6MVV5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVV5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit beta | F [auth f], W [auth F] | 42 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVV4 (Rhodomonas salina) Explore A6MVV4  Go to UniProtKB:  A6MVV4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVV4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein H | G [auth h], X [auth H] | 67 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MW35 (Rhodomonas salina) Explore A6MW35  Go to UniProtKB:  A6MW35 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MW35 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein I | H [auth i], Y [auth I] | 38 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVW0 (Rhodomonas salina) Explore A6MVW0  Go to UniProtKB:  A6MVW0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVW0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein K | I [auth k], Z [auth K] | 45 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVZ3 (Rhodomonas salina) Explore A6MVZ3  Go to UniProtKB:  A6MVZ3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVZ3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein L | AA [auth L], J [auth l] | 38 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVV3 (Rhodomonas salina) Explore A6MVV3  Go to UniProtKB:  A6MVV3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVV3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein M | BA [auth M], K [auth m] | 40 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein T | CA [auth T], L [auth t] | 32 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MW32 (Rhodomonas salina) Explore A6MW32  Go to UniProtKB:  A6MW32 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MW32 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein W | DA [auth W], M [auth w] | 74 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center X protein | EA [auth X], N [auth x] | 39 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVU5 (Rhodomonas salina) Explore A6MVU5  Go to UniProtKB:  A6MVU5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVU5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein Psb30 | FA [auth Y], O [auth y] | 34 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVU9 (Rhodomonas salina) Explore A6MVU9  Go to UniProtKB:  A6MVU9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVU9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein Z | GA [auth Z], P [auth z] | 62 | Rhodomonas salina | Mutation(s): 0  Membrane Entity: Yes  | |
UniProt | |||||
Find proteins for A6MVZ2 (Rhodomonas salina) Explore A6MVZ2  Go to UniProtKB:  A6MVZ2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6MVZ2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NCP | MA [auth G], Q [auth g] | 284 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CAC2 | HA [auth 2], OA [auth O] | 217 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CAC3 | IA [auth 3], PA [auth P] | 221 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CAC4 | JA [auth 4], QA [auth Q] | 216 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CAC5 | KA [auth 5], RA [auth R] | 229 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CAC6 | LA [auth 6], SA [auth S] | 227 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CAC1 | NA [auth 1], TA [auth N] | 233 | Rhodomonas salina | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 16 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | IG [auth H], JD [auth h], TF [auth C], UC [auth c] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CLA Query on CLA | AD [auth d] AG [auth D] AH [auth 2] AI [auth 4] AK [auth G] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
PHO Query on PHO | WD [auth A], XA [auth a], XF [auth D], YC [auth d] | PHEOPHYTIN A C55 H74 N4 O5 CQIKWXUXPNUNDV-RCBXBCQGSA-N | |||
SQD Query on SQD | AB [auth a], BE [auth A], CB [auth a], ZD [auth A] | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL C41 H78 O12 S RVUUQPKXGDTQPG-JUDHQOGESA-N | |||
LMG Query on LMG | AF [auth B] BC [auth b] CK [auth G] DG [auth D] ED [auth d] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
PL9 Query on PL9 | AE [auth A], BB [auth a], BG [auth D], CD [auth d] | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE C53 H80 O2 FKUYMLZIRPABFK-UHFFFAOYSA-N | |||
LHG Query on LHG | BF [auth B] CC [auth b] CG [auth D] DD [auth d] DE [auth A] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
HEM Query on HEM | FG [auth E], GD [auth e] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
KC2 Query on KC2 | AJ [auth 5] CI [auth 4] FL [auth O] HI [auth 4] HK [auth 1] | Chlorophyll c2 C35 H28 Mg N4 O5 QDRBYWCRXZZVLY-QIEHNWLWSA-L | |||
II0 Query on II0 | AM [auth P] BH [auth 2] BM [auth P] BO [auth S] CH [auth 2] | (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol C40 H52 O2 DVICWXUADSCSLL-DDEWRDOISA-N | |||
IHT Query on IHT | FH [auth 2] HJ [auth 5] ML [auth O] ON [auth R] PI [auth 4] | (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol C40 H54 O UNJKJDIRJWIHLL-BQLQDKTLSA-N | |||
WVN Query on WVN | AC [auth b] EG [auth D] EM [auth P] FD [auth d] FO [auth S] | 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene C40 H56 ANVAOWXLWRTKGA-NTXLUARGSA-N | |||
BCT (Subject of Investigation/LOI) Query on BCT | CE [auth A], DB [auth a] | BICARBONATE ION C H O3 BVKZGUZCCUSVTD-UHFFFAOYSA-M | |||
FE2 Query on FE2 | TD [auth A], UA [auth a] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N | |||
MN Query on MN | FE [auth A], GB [auth a], GE [auth A], HB [auth a] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CL Query on CL | CF [auth C], DC [auth c], EE [auth A], FB [auth a] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Funding Organization | Location | Grant Number |
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National Basic Research Program of China (973 Program) | China | -- |