8RS9

p97 (VCP) double mutant - F266A F539A

PDB DOI: https://doi.org/10.2210/pdb8RS9/pdb
EM Map EMD-19473: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2024-01-24 Released: 2024-05-29
Deposition Author(s): Arie, M., Matzov, D., Karmona, R., Szenkier, N., Stanhill, A., Navon, A.
Funding Organization(s): Israel Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

p97 (VCP) double mutant - F266A F539A

Arie, M., Matzov, D., Karmona, R., Szenkier, N., Stanhill, A., Navon, A.

To be published.

Macromolecule Content

Total Structure Weight: 535.71 kDa
Atom Count: 31,359
Modelled Residue Count: 4,458
Deposited Residue Count: 4,836
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transitional endoplasmic reticulum ATPase	A, B, C, D, E A, B, C, D, E, F	806	Homo sapiens	Mutation(s): 2 Gene Names: VCP, HEL-220, HEL-S-70 EC: 3.6.4.6
UniProt & NIH Common Fund Data Resources
Find proteins for P55072 (Homo sapiens) Explore P55072 Go to UniProtKB: P55072
PHAROS: P55072 GTEx: ENSG00000165280
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P55072
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	cryoSPARC	3.2
RECONSTRUCTION	cryoSPARC	3.2

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Israel Science Foundation	Israel	2038/17

Revision History (Full details and data files)

Version 1.0: 2024-05-29
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.