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p97 (VCP) double mutant - F266A F539A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FTN
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.8491 f_angle_d 0.685 f_chiral_restr 0.0446 f_plane_restr 0.0041 f_bond_d 0.0031
Sample Tertiary complex of the hexameric p97 F266A F539A double mutant
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details pre-blotting incubation time of 20 secounds and blot for 3.5 seconds with -1 blot force
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 79612 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C6
Map-Model Fitting and Refinement Id 1 (5FTN) Refinement Space Refinement Protocol Refinement Target Overall B Value 111 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 38
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.1.2 IMAGE ACQUISITION EPU CTF CORRECTION RELION 3.1.2 MODEL FITTING RELION 3.1.2 MODEL REFINEMENT cryoSPARC 3.2 INITIAL EULER ASSIGNMENT RELION 3.1.2 FINAL EULER ASSIGNMENT RELION 3.1.2 CLASSIFICATION RELION 3.1.2 RECONSTRUCTION cryoSPARC 3.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3005242