Distal drug resistance mutations promote covalent inhibitor-adduct Grob fragmentation in LSD1
Caroli, J., Mattevi, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific histone demethylase 1A | 871 | Homo sapiens | Mutation(s): 0  Gene Names: KDM1A, AOF2, KDM1, KIAA0601, LSD1 EC: 1.14.99.66 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60341 (Homo sapiens) Explore O60341  Go to UniProtKB:  O60341 | |||||
PHAROS:  O60341 GTEx:  ENSG00000004487  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60341 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
REST corepressor 1 | 144 | Homo sapiens | Mutation(s): 0  Gene Names: RCOR1, KIAA0071, RCOR | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UKL0 (Homo sapiens) Explore Q9UKL0  Go to UniProtKB:  Q9UKL0 | |||||
PHAROS:  Q9UKL0 GTEx:  ENSG00000089902  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UKL0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
XHT (Subject of Investigation/LOI) Query on XHT | C [auth A] | [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2S,3R,4S)-2,3,4-trihydroxy-5-[(1R,3R,3aS,13R)-1-hydroxy-10,11-dimethyl-3-{3-[(5-methyl-1,3,4-thiadiazol-2-yl)carbamoyl]phenyl}-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]pentyl dihydrogen diphosphate (non-preferred name) C40 H46 N12 O17 P2 S JRKGMKMIFCZHIM-MLZWWOTBSA-N | |||
XHX (Subject of Investigation/LOI) Query on XHX | D [auth A] | 3-[(1R,2S)-2-(cyclobutylamino)cyclopropyl]-N-(5-methyl-1,3,4-thiadiazol-2-yl)benzamide C17 H20 N4 O S HQRYNOVKRKLADI-CABCVRRESA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 119.016 | α = 90 |
b = 179.591 | β = 90 |
c = 232.891 | γ = 90 |
Software Name | Purpose |
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Aimless | data scaling |
PHENIX | refinement |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Italian Association for Cancer Research | Italy | IG19808 |