Distal drug resistance mutations promote covalent inhibitor-adduct Grob fragmentation in LSD1
Caroli, J., Mattevi, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific histone demethylase 1A | 871 | Homo sapiens | Mutation(s): 0  Gene Names: KDM1A, AOF2, KDM1, KIAA0601, LSD1 EC: 1.14.99.66 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60341 (Homo sapiens) Explore O60341  Go to UniProtKB:  O60341 | |||||
PHAROS:  O60341 GTEx:  ENSG00000004487  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60341 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
REST corepressor 1 | 144 | Homo sapiens | Mutation(s): 0  Gene Names: RCOR1, KIAA0071, RCOR | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UKL0 (Homo sapiens) Explore Q9UKL0  Go to UniProtKB:  Q9UKL0 | |||||
PHAROS:  Q9UKL0 GTEx:  ENSG00000089902  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UKL0 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Zinc finger protein SNAI1 | 9 | Homo sapiens | Mutation(s): 0  Gene Names: SNAI1, SNAH | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O95863 (Homo sapiens) Explore O95863  Go to UniProtKB:  O95863 | |||||
PHAROS:  O95863 GTEx:  ENSG00000124216  | |||||
Entity Groups   | |||||
UniProt Group | O95863 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HUF (Subject of Investigation/LOI) Query on HUF | D [auth A] | [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate C28 H35 N9 O16 P2 KZQASMOVHMAAKH-MZWSMYJRSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 119.298 | α = 90 |
b = 180.388 | β = 90 |
c = 232.884 | γ = 90 |
Software Name | Purpose |
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Aimless | data scaling |
PHENIX | refinement |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Italian Association for Cancer Research | Italy | IG19808 |