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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "Hydrolase/hydrolase activator"

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Trypanosoma brucei (9)
	Homo sapiens (7)
	Thermoplasma acidophilum (7)
	Escherichia coli K-12 (5)
	Saccharomyces cerevisiae (2)
	Escherichia coli (1)
	Methanocaldococcus jannaschii (1)
	Streptococcus dysgalactiae subsp. equisimilis (1)

Taxonomy

	Eukaryota (16)
	Archaea (7)
	Bacteria (7)

Experimental Method

	X-RAY DIFFRACTION (21)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (8)
	3.0 - 3.5 (7)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (15)
	2010 - 2014 (4)
	2015 - 2019 (1)

Enzyme Classification Name

	Hydrolases (22)
	Transferases (2)

Symmetry Type

	Cyclic (10)
	Asymmetric (6)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	All alpha proteins (6)
	All beta proteins (3)
	Artifacts (1)

AllSelected

1 to 22 of 22 Structures

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1FNT \| pdb_00001fnt	Download File View File

CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST IN COMPLEX WITH THE PROTEASOME ACTIVATOR PA26 FROM TRYPANOSOME BRUCEI AT 3.2 ANGSTROMS RESOLUTION

Whitby, F.G., Masters, E., Kramer, L., Knowlton, J.R., Yao, Y., Wang, C.C., Hill, C.P.

(2000) Nature 408: 115-120

Released	2001-04-11
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae Trypanosoma brucei
Macromolecule	Unique protein chains: 15
Unique Ligands	MG

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1L4D \| pdb_00001l4d	Download File View File

CRYSTAL STRUCTURE OF MICROPLASMINOGEN-STREPTOKINASE ALPHA DOMAIN COMPLEX

Wakeham, N., Terzyan, S., Zhai, P., Loy, J.A., Tang, J., Zhang, X.C.

(2002) Protein Eng 15: 753-761

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Streptococcus dysgalactiae subsp. equisimilis
Macromolecule	PLASMINOGEN (protein) STREPTOKINASE (protein)
Unique Ligands	SO4

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1YA7 \| pdb_00001ya7	Download File View File

Implications for interactions of proteasome with PAN and PA700 from the 1.9 A structure of a proteasome-11S activator complex

Forster, A., Masters, E.I., Whitby, F.G., Robinson, H., Hill, C.P.

(2005) Mol Cell 18: 589-599

Released	2005-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome alpha subunit (protein) Proteasome beta subunit (protein) proteasome activator protein PA26 (protein)
Unique Ligands	GOL, SO4

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1YAR \| pdb_00001yar	Download File View File

Structure of Archeabacterial 20S proteasome mutant D9S- PA26 complex

Forster, A., Masters, E.I., Whitby, F.G., Robinson, H., Hill, C.P.

(2005) Mol Cell 18: 589-599

Released	2005-07-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome alpha subunit (protein) Proteasome beta subunit (protein) proteasome activator protein PA26 (protein)
Unique Ligands	GOL, SO4

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1YAU \| pdb_00001yau	Download File View File

Structure of Archeabacterial 20S proteasome- PA26 complex

Forster, A., Masters, E.I., Whitby, F.G., Robinson, H., Hill, C.P.

(2005) Mol Cell 18: 589-599

Released	2005-07-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome alpha subunit (protein) Proteasome beta subunit (protein) proteasome activator protein PA26 (protein)
Unique Ligands	GOL, SO4

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1Z7Q \| pdb_00001z7q	Download File View File

Crystal structure of the 20s proteasome from yeast in complex with the proteasome activator PA26 from Trypanosome brucei at 3.2 angstroms resolution

Forster, A., Whitby, F.G., Hill, C.P.

(2005) Mol Cell 18: 589-599

Released	2005-08-09
Method	X-RAY DIFFRACTION 3.22 Å
Organisms	Saccharomyces cerevisiae Trypanosoma brucei
Macromolecule	Unique protein chains: 15

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2IY0 \| pdb_00002iy0	Download File View File

SENP1 (mutant) SUMO1 RanGAP

Shen, L., Dong, C., Naismith, J.H.

(2006) Nat Struct Mol Biol 13: 1069

Released	2006-08-07
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Homo sapiens
Macromolecule	RAN GTPASE-ACTIVATING PROTEIN 1 (protein) SENTRIN-SPECIFIC PROTEASE 1 (protein) SMALL UBIQUITIN-RELATED MODIFIER 1 (protein)

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2LOZ \| pdb_00002loz	Download File View File

The novel binding mode of DLC1 and Tensin2 PTB domain

Liu, C., Chen, L., Zhu, G.

(2012) J Biological Chem 287: 26104-26114

Released	2012-06-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Rho GTPase-activating protein 7 (protein) Tensin-like C1 domain-containing phosphatase (protein)

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2R3Y \| pdb_00002r3y	Download File View File

Crystal structure of the DegS protease in complex with the YWF activating peptide

Clausen, T., Hasselblatt, H.

(2007) Genes Dev 21: 2659-2670

Released	2007-11-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Protease degS (protein) Synthetic peptide YWF (protein)

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3GCN \| pdb_00003gcn	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with OMP peptide (YQF)

Sohn, J., Sauer, R.T., Grant, R.A.

To be published

Released	2009-03-31
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein) YQF peptide (protein)

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3GCO \| pdb_00003gco	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with DNRDGNVYQF OMP peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.798 Å
Organisms	Escherichia coli K-12
Macromolecule	DNRDGNVYQF peptide (protein) Protease degS (protein)

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3GDS \| pdb_00003gds	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with DNRDGNVYYF peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12
Macromolecule	DNRDGNVYYF peptide (protein) Protease degS (protein)

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3GDU \| pdb_00003gdu	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP and in complex with YRF peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	DegS protease (protein) YRF peptide (protein)

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3GDV \| pdb_00003gdv	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP and in complex with YQF peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.489 Å
Organisms	Escherichia coli K-12
Macromolecule	DegS protease (protein) YQF peptide (protein)

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3IPM \| pdb_00003ipm	Download File View File

Crystal Structure of Archaeal 20S Proteasome in Complex with the C-terminus of PAN

Yu, Y., Cheng, Y.

(2010) EMBO J 29: 692-702

Released	2009-12-29
Method	X-RAY DIFFRACTION 4 Å
Organisms	Methanocaldococcus jannaschii Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome activator PA26, Proteasome-activating nucleotidase fusion protein (protein) Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3JRM \| pdb_00003jrm	Download File View File

Crystal structure of archaeal 20S proteasome in complex with mutated P26 activator

Stadtmueller, B.M., Whitby, F.G., Hill, C.P.

(2010) J Biological Chem 285: 13-17

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome activator protein PA26 (protein) Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3JSE \| pdb_00003jse	Download File View File

Crystal structure of archaeal 20S proteasome in complex with mutated P26 activator

Stadtmueller, B.M., Whitby, F.G., Hill, C.P.

(2010) J Biological Chem 285: 13-17

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome activator protein PA26 (protein) Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3JTL \| pdb_00003jtl	Download File View File

Crystal structure of archaeal 20S proteasome in complex with mutated P26 activator

Stadtmueller, B.M., Whitby, F.G., Hill, C.P.

(2010) J Biological Chem 285: 13-17

Released	2009-11-03
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermoplasma acidophilum Trypanosoma brucei
Macromolecule	Proteasome activator protein PA26 (protein) Proteasome subunit alpha (protein) Proteasome subunit beta (protein)

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3O47 \| pdb_00003o47	Download File View File

Crystal structure of ARFGAP1-ARF1 fusion protein

Wang, H., Tong, Y., Nedyalkova, L., Tempel, W., Guan, X., Crombet, L., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

To be published

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor GTPase-activating protein 1, ADP-ribosylation factor 1 (protein)
Unique Ligands	GDP, ZN

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4G9J \| pdb_00004g9j	Download File View File

Protein Ser/Thr phosphatase-1 in complex with cell-permeable peptide

Sukackaite, R., Chatterjee, J., Beullens, M., Bollen, M., Koehn, M., Hart, D.J.

(2012) Angew Chem Int Ed Engl 51: 10054-10059

Released	2012-09-19
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit (protein) synthetic peptide (protein)
Unique Ligands	MN

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4HDA \| pdb_00004hda	Download File View File

Crystal structure of human Sirt5 in complex with Fluor-de-Lys peptide and resveratrol

Gertz, M., Steegborn, C.

(2012) PLoS One 7: e49761-e49761

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Homo sapiens
Macromolecule	Fluor-de-Lys peptide (protein) NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	STL, ZN

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4ZZH \| pdb_00004zzh	Download File View File

SIRT1/Activator Complex

Dai, H.

(2015) Nat Commun 6: 7645-7645

Released	2015-07-15
Method	X-RAY DIFFRACTION 3.1001 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-1 (protein)
Unique Ligands	4TO, ZN

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FNT | pdb_00001fnt

1L4D | pdb_00001l4d

1YA7 | pdb_00001ya7

1YAR | pdb_00001yar

1YAU | pdb_00001yau

1Z7Q | pdb_00001z7q

2IY0 | pdb_00002iy0

2LOZ | pdb_00002loz

2R3Y | pdb_00002r3y

3GCN | pdb_00003gcn

3GCO | pdb_00003gco

3GDS | pdb_00003gds

3GDU | pdb_00003gdu

3GDV | pdb_00003gdv

3IPM | pdb_00003ipm

3JRM | pdb_00003jrm

3JSE | pdb_00003jse

3JTL | pdb_00003jtl

3O47 | pdb_00003o47

4G9J | pdb_00004g9j

4HDA | pdb_00004hda

4ZZH | pdb_00004zzh