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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xiong, B."

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Search Summary

This query matches 71 Structures.

Refinements

Structure Determination Methodology

experimental (71)

Scientific Name of Source Organism

	Homo sapiens (62)
	Legionella pneumophila serogroup 1 (3)
	Microbacterium oxydans (2)
	Enterococcus faecalis (1)
	Enterococcus faecium (1)
	Legionella pneumophila 130b (1)
	Severe acute respiratory syndrome coronavirus 2 (1)

Taxonomy

	Eukaryota (62)
	Bacteria (8)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (69)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (71)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (32)
	2.0 - 2.5 (12)
	2.5 - 3.0 (8)
	3.0 - 3.5 (7)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (33)
	2015 - 2019 (18)
	2020 - 2024 (17)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (29)
	Transferases (8)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (60)
	Cyclic (15)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (23)
	All alpha proteins (21)
	Artifacts (18)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 71 Structures

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2A4N \| pdb_00002a4n	Download File View File

Crystal structure of aminoglycoside 6'-N-acetyltransferase complexed with coenzyme A

Burk, D.L., Xiong, B., Breitbach, C., Berghuis, A.M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1273-1279

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterococcus faecium
Macromolecule	aac(6')-Ii (protein)
Unique Ligands	COA, SO4

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3I0O \| pdb_00003i0o	Download File View File

Crystal Structure of Spectinomycin Phosphotransferase, APH(9)-Ia, in complex with ADP and Spectinomcyin

Fong, D.H., Lemke, C.T., Hwang, J., Xiong, B., Berghuis, A.M.

(2010) J Biological Chem 285: 9545-9555

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Legionella pneumophila serogroup 1
Macromolecule	Spectinomycin phosphotransferase (protein)
Unique Ligands	ADP, MG, NI, SMI

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3I0Q \| pdb_00003i0q	Download File View File

Crystal Structure of the AMP-bound complex of Spectinomycin Phosphotransferase, APH(9)-Ia

Berghuis, A.M., Fong, D.H., Lemke, C.T., Hwang, J.-Y., Xiong, B.

(2010) J Biological Chem 285: 9545-9555

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Legionella pneumophila serogroup 1
Macromolecule	Spectinomycin phosphotransferase (protein)
Unique Ligands	AMP, NI

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3I1A \| pdb_00003i1a	Download File View File

Crystal Structure of apo Spectinomycin Phosphotransferase, APH(9)-Ia

Berghuis, A.M., Fong, D.H., Lemke, C.T., Hwang, J., Xiong, B.

(2010) J Biological Chem 285: 9545-9555

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Legionella pneumophila serogroup 1
Macromolecule	Spectinomycin phosphotransferase (protein)
Unique Ligands	DMS, MES, PG4

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3Q2J \| pdb_00003q2j	Download File View File

Crystal Structure of 3',5"-Aminoglycoside Phosphotransferase Type IIIa Protein Kinase Inhibitor CKI-7 Complex

Fong, D.H., Xiong, B., Hwang, J., Berghuis, A.M.

(2011) PLoS One 6: e19589-e19589

Released	2011-05-18
Method	X-RAY DIFFRACTION 2.1501 Å
Organisms	Enterococcus faecalis
Macromolecule	Aminoglycoside 3'-phosphotransferase (protein)
Unique Ligands	CA, CKI

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3Q2M \| pdb_00003q2m	Download File View File

Crystal Structure of Spectinomycin Phosphotransferase, APH(9)-Ia, Protein Kinase Inhibitor CKI-7 Complex

Berghuis, A.M., Fong, D.H., Xiong, B., Hwang, J.

(2011) PLoS One 6: e19589-e19589

Released	2011-05-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Legionella pneumophila 130b
Macromolecule	Spectinomycin phosphotransferase (protein)
Unique Ligands	CKI, NI

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4DON \| pdb_00004don	Download File View File

Brd4 Bromodomain 1 complex with a fragment 3,4-Dihydro-3-methyl-2(1H)-quinazolinon

Xiong, B., Cao, D.Y., Chen, W.Y., Chen, T.T., Xu, Y.C., Shen, J.K.

To be published

Released	2013-02-13
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	3PF

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4DSA \| pdb_00004dsa	Download File View File

Crystal Structure of DPP-IV with Compound C1

Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	D1C

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4DSZ \| pdb_00004dsz	Download File View File

Crystal Structure of DPP-IV with Compound C2

Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	DC3

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4DTC \| pdb_00004dtc	Download File View File

Crystal Structure of DPP-IV with Compound C5

Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	D5C

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4HXK \| pdb_00004hxk	Download File View File

Brd4 Bromodomain 1 complex with 6,7-DIHYDROTHIENO[3,2-C]PYRIDIN-5(4H)-YL(1H-IMIDAZOL-1-YL)METHANONE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1AJ

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4HXL \| pdb_00004hxl	Download File View File

Brd4 Bromodomain 1 complex with 3-CYCLOHEXYL-N-{3-(2-OXO-2,3-DIHYDRO-1,3-THIAZOL-4-YL)-5-[(THIOPHEN-2-YLSULFONYL)AMINO]PHENYL}PROPANAMIDE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A9

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4HXM \| pdb_00004hxm	Download File View File

Brd4 Bromodomain 1 complex with N-{3-(2-OXO-2,3-DIHYDRO-1,3-THIAZOL-4-YL)-5-[(THIOPHEN-2-YLSULFONYL)AMINO]PHENYL}BUTANAMIDE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A8

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4HXN \| pdb_00004hxn	Download File View File

Brd4 Bromodomain 1 complex with 4-(2-FLUOROPHENYL)-1,3-THIAZOL-2(3H)-ONE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A7

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4HXO \| pdb_00004hxo	Download File View File

Brd4 Bromodomain 1 complex with 3-{[(3-METHYL-1,2-OXAZOL-5-YL)METHYL]SULFANYL}[1,2,4]TRIAZOLO[4,3-A]PYRIDINE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A6

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4HXP \| pdb_00004hxp	Download File View File

Brd4 Bromodomain 1 complex with 4-(2-OXO-1,3-OXAZOLIDIN-3-YL)BENZAMIDE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A5

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4HXR \| pdb_00004hxr	Download File View File

Brd4 Bromodomain 1 complex with N-[3-(2-OXO-2,3-DIHYDRO-1,3-THIAZOL-4-YL)PHENYL]THIOPHENE-2-SULFONAMIDE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A4

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4HXS \| pdb_00004hxs	Download File View File

Brd4 Bromodomain 1 complex with N-[3-(2-OXO-2,3-DIHYDRO-1,3-THIAZOL-4-YL)PHENYL]-1-PHENYLMETHANESULFONAMIDE inhibitor

Chen, T.T., Cao, D.Y., Chen, W.Y., Xiong, B., Shen, J.K., Xu, Y.C.

(2013) J Med Chem 56: 3833-3851

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1A3

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4I58 \| pdb_00004i58	Download File View File

Cyclohexylamine Oxidase from Brevibacterium oxydans IH-35A

Mirza, I.A., Berghuis, A.M.

(2013) PLoS One 8: e60072-e60072

Released	2013-05-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Microbacterium oxydans
Macromolecule	Cyclohexylamine Oxidase (protein)
Unique Ligands	FAD

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4I59 \| pdb_00004i59	Download File View File

Cyclohexylamine Oxidase from Brevibacterium oxydans IH-35A complexed with cyclohexanone

Mirza, I.A., Berghuis, A.M.

(2013) PLoS One 8: e60072-e60072

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Microbacterium oxydans
Macromolecule	Cyclohexylamine Oxidase (protein)
Unique Ligands	CYH, FAD

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4IVS \| pdb_00004ivs	Download File View File

Crystal structure of BACE1 with its inhibitor

Chen, T.T., Li, L., Chen, W.Y., Xu, Y.C.

(2013) Molecules 18: 5706-5722

Released	2013-11-13
Method	X-RAY DIFFRACTION 2.636 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	VSI

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4IVT \| pdb_00004ivt	Download File View File

Crystal structure of BACE1 with its inhibitor

Chen, T.T., Li, L., Chen, W.Y., Xu, Y.C.

(2013) Molecules 18: 5706-5722

Released	2013-11-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	SO4, VTI

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4J3J \| pdb_00004j3j	Download File View File

Crystal Structure of DPP-IV with Compound C3

Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

(2013) ChemMedChem 8: 1104-1116

Released	2014-02-05
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	D3C

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4L8Z \| pdb_00004l8z	Download File View File

Crystal structure of Human Hsp90 with RL1

Li, J., Ren, J., Yang, M., Xiong, B., He, J.

(2014) Bioorg Med Chem Lett 24: 2525-2529

Released	2014-06-18
Method	X-RAY DIFFRACTION 1.703 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	RL1

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4L90 \| pdb_00004l90	Download File View File

Crystal structure of Human Hsp90 with RL3

Li, J., Ren, J., Yang, M., Xiong, B., He, J.

To be published

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	RL3

1 to 25 of 71 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2A4N | pdb_00002a4n

3I0O | pdb_00003i0o

3I0Q | pdb_00003i0q

3I1A | pdb_00003i1a

3Q2J | pdb_00003q2j

3Q2M | pdb_00003q2m

4DON | pdb_00004don

4DSA | pdb_00004dsa

4DSZ | pdb_00004dsz

4DTC | pdb_00004dtc

4HXK | pdb_00004hxk

4HXL | pdb_00004hxl

4HXM | pdb_00004hxm

4HXN | pdb_00004hxn

4HXO | pdb_00004hxo

4HXP | pdb_00004hxp

4HXR | pdb_00004hxr

4HXS | pdb_00004hxs

4I58 | pdb_00004i58

4I59 | pdb_00004i59

4IVS | pdb_00004ivs

4IVT | pdb_00004ivt

4J3J | pdb_00004j3j

4L8Z | pdb_00004l8z

4L90 | pdb_00004l90