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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sharma, K."

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Homo sapiens (12)
	Bos taurus (11)
	Artocarpus integer (10)
	Mus musculus (3)
	Saccharomyces cerevisiae S288C (3)
	Acetivibrio thermocellus (2)
	Brucella abortus bv. 1 str. 9-941 (2)
	Escherichia coli O157:H7 (2)
	Klebsiella pneumoniae (2)
	Methanococcus maripaludis (2)

More...

Taxonomy

	Eukaryota (40)
	Bacteria (9)
	Archaea (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (32)
	ELECTRON MICROSCOPY (21)

Polymer Entity Type

	Protein (52)
	RNA (2)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (15)
	2.0 - 2.5 (8)
	2.5 - 3.0 (10)
	3.0 - 3.5 (11)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (18)
	2020 - 2024 (25)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (9)

Membrane Protein Annotation

	PDBTM (12)
	MemProtMD (10)

Symmetry Type

	Cyclic (29)
	Asymmetric (18)
	Dihedral (7)
	Helical (2)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (1)
	Small proteins (1)

AllSelected

1 to 25 of 53 Structures

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4BRU \| pdb_00004bru	Download File View File

Crystal structure of the yeast Dhh1-Edc3 complex

Sharif, H., Ozgur, S., Sharma, K., Basquin, C., Urlaub, H., Conti, E.

(2013) Nucleic Acids Res 41: 8377

Released	2013-07-24
Method	X-RAY DIFFRACTION 3.245 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	ATP-DEPENDENT RNA HELICASE DHH1 (protein) ENHANCER OF MRNA-DECAPPING PROTEIN 3 (protein)

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4BRW \| pdb_00004brw	Download File View File

Crystal structure of the yeast Dhh1-Pat1 complex

Sharif, H., Ozgur, S., Sharma, K., Basquin, C., Urlaub, H., Conti, E.

(2013) Nucleic Acids Res 41: 8377

Released	2013-07-24
Method	X-RAY DIFFRACTION 2.795 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	ATP-DEPENDENT RNA HELICASE DHH1 (protein) DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1 (protein)
Unique Ligands	1PE, MPD

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4BY6 \| pdb_00004by6	Download File View File

Yeast Not1-Not2-Not5 complex

Bhaskar, V., Basquin, J., Conti, E.

(2013) Nat Struct Mol Biol 20: 1281

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.797 Å
Organisms	Saccharomyces cerevisiae CEN.PK113-7D Saccharomyces cerevisiae S288C
Macromolecule	GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 (protein) GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 2 (protein) GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 5 (protein)
Unique Ligands	ACT, CA, GOL, PEG

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4PCJ \| pdb_00004pcj	Download File View File

Modifications to toxic CUG RNAs induce structural stability and rescue mis-splicing in Myotonic Dystrophy

Coonrod, L.A., Reister, E.E., Berglund, J.A.

(2014) Nucleic Acids Res 42: 12768-12778

Released	2014-10-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	synthetic construct
Macromolecule	trCUG-3('5) (nucleic acid)
Unique Ligands	MG

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4R6N \| pdb_00004r6n	Download File View File

Jacalin-carbohydrate interactions. Distortion of the ligand as a determinant of affinity

Abhinav, K.V., Sharma, K., Swaminathan, C.P., Surolia, A., Vijayan, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 324-331

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, IPA, MBG

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4R6O \| pdb_00004r6o	Download File View File

Jacalin-carbohydrate interactions. Distortion of the ligand as a determinant of affinity.

Abhinav, K.V., Sharma, K., Swaminathan, C.P., Surolia, A., Vijayan, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 324-331

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, GLA, IPA, ZZ1

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4R6P \| pdb_00004r6p	Download File View File

Jacalin-carbohydrate interactions. Distortion of the ligand as a determinant of affinity.

Abhinav, K.V., Sharma, K., Swaminathan, C.P., Surolia, A., Vijayan, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 324-331

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, GAL, IPA, ZZ1

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4R6Q \| pdb_00004r6q	Download File View File

Jacalin-carbohydrate interactions. Distortion of the ligand as a determinant of affinity.

Abhinav, K.V., Sharma, K., Swaminathan, C.P., Surolia, A., Vijayan, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 324-331

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, GLA, IPA, NBZ

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4R6R \| pdb_00004r6r	Download File View File

Jacalin-carbohydrate interactions. Distortion of the ligand as a determinant of affinity.

Abhinav, K.V., Sharma, K., Swaminathan, C.P., Surolia, A., Vijayan, M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 324-331

Released	2015-02-18
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	147, EDO, IPA

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4TXD \| pdb_00004txd	Download File View File

Crystal structure of Thermofilum pendens Csc2

Hrle, A., Conti, E.

(2014) RNA Biol 11: 1072-1082

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.818 Å
Organisms	Thermofilum pendens
Macromolecule	Csc2 (protein)
Unique Ligands	ZN

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4Z7K \| pdb_00004z7k	Download File View File

Crystal structure of CRISPR RNA processing endoribonuclease Cas6b

Li, H.

(2016) Structure 24: 547-554

Released	2016-04-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methanococcus maripaludis Methanococcus maripaludis C5
Macromolecule	Cas6b (protein) RNA/DNA Hybrid (31-MER) (hybrid)

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4Z7L \| pdb_00004z7l	Download File View File

Crystal structure of Cas6b

Li, H.

(2016) Structure 24: 547-554

Released	2016-04-13
Method	X-RAY DIFFRACTION 3.503 Å
Organisms	Methanococcus maripaludis Methanococcus maripaludis C5
Macromolecule	Cas6b (protein) RNA (5'-R(GPCPAPAPAPAPUPAPAPCPAPAPGPC)-3') (nucleic acid)
Unique Ligands	SO4

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5A8C \| pdb_00005a8c	Download File View File

The ultra high resolution structure of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405 with bound trimethyl N-Oxide (TRS)

Goyal, A., Ahmed, S., Sharma, K., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Struct Biol 72: 1281-1289

Released	2016-07-27
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	CA, TRS

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5A8D \| pdb_00005a8d	Download File View File

The high resolution structure of a novel alpha-L-arabinofuranosidase (CtGH43) from Clostridium thermocellum ATCC 27405

Goyal, A., Ahmed, S., Sharma, K., Fontes, C.M.G.A., Najmudin, S.

(2016) Acta Crystallogr D Struct Biol 72: 1281-1289

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CARBOHYDRATE BINDING FAMILY 6 (protein)
Unique Ligands	ACT, GOL, SO4

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5HY7 \| pdb_00005hy7	Download File View File

SF3B10-SF3B130 from Chaetomium thermophilum

Ponce-Salvatierra, A., Schmitzova, J., Pena, V.

(2016) Mol Cell 64: 307-319

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermochaetoides thermophila DSM 1495
Macromolecule	Putative pre-mRNA splicing protein (protein) YSF3 (protein)
Unique Ligands	CA

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5IFE \| pdb_00005ife	Download File View File

Crystal structure of the human SF3b core complex

Cretu, C., Dybkov, O., De Laurentiis, E., Will, C.L., Luhrmann, R., Pena, V.

(2016) Mol Cell 64: 307-319

Released	2016-10-26
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	PHD finger-like domain-containing protein 5A (protein) Splicing factor 3B subunit 1 (protein) Splicing factor 3B subunit 3 (protein) Splicing factor 3B subunit 5 (protein)
Unique Ligands	K, ZN

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5J4T \| pdb_00005j4t	Download File View File

Structure of tetrameric jacalin complexed with GlcNAc beta-(1,3) Gal-beta-OMe

Abhinav, K.V., Sharma, K., Surolia, A., Vijayan, M.

(2017) IUBMB Life 69: 72-78

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, MBG, PEG
Unique branched monosaccharides	MBG, NAG

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5J4X \| pdb_00005j4x	Download File View File

Structure of tetrameric jacalin complexed with Gal beta-(1,3) Gal-beta-OMe

Abhinav, K.V., Sharma, K., Surolia, A., Vijayan, M.

(2017) IUBMB Life 69: 72-78

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, IPA
Unique branched monosaccharides	GAL, MBG

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5J50 \| pdb_00005j50	Download File View File

Structure of tetrameric jacalin complexed with Gal beta-(1,3) GalNAc-alpha-OPNP

Abhinav, K.V., Sharma, K., Surolia, A., Vijayan, M.

To be published

Released	2017-02-08
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, NPO, PEG
Unique branched monosaccharides	A2G, GAL

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5J51 \| pdb_00005j51	Download File View File

Structure of tetrameric jacalin complexed with Gal alpha-(1,4) Gal

Abhinav, K.V., Sharma, K., Surolia, A., Vijayan, M.

(2016) IUBMB Life 68: 971-979

Released	2016-12-14
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	EDO, IPA, PEG
Unique branched monosaccharides	GLA

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5JM1 \| pdb_00005jm1	Download File View File

Structure of tetrameric jacalin complexed with a trisaccharide, Gal alpha-(1,3) Gal beta-(1,4) Gal

Abhinav, K.V., Sharma, K., Surolia, A., Vijayan, M.

(2016) IUBMB Life 68: 971-979

Released	2016-12-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Artocarpus integer
Macromolecule	Agglutinin alpha chain (protein) Agglutinin beta-3 chain (protein)
Unique Ligands	AMG, EDO, PEG
Unique branched monosaccharides	GAL, GLA

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6FOP \| pdb_00006fop	Download File View File

Glycoside hydrolase family 81 from Clostridium thermocellum (CtLam81A), Mutant E515A

Correia, M.A.S.C., Carvalho, A.L.

(2018) Int J Biol Macromol 117: 890-901

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Glycoside hydrolase family 81 (protein)
Unique Ligands	ACT, CA, CL, MG, MPD, NA, NI

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6H22 \| pdb_00006h22	Download File View File

Crystal structure of Mdm2 bound to a stapled peptide

Wang, X., Sharma, K., Spring, D.R., Hyvonen, M.

(2019) Org Biomol Chem 17: 8014-8018

Released	2019-07-31
Method	X-RAY DIFFRACTION 2.006 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein) Stapled peptide (protein)
Unique Ligands	FL5

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6Y4Q \| pdb_00006y4q	Download File View File

Structure of a stapled peptide bound to MDM2

Pantelejevs, T., Bakanovych, I.

(2020) Org Biomol Chem 18: 5359-5369

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	ACE-LEU-THR-PHE-GLY-GLU-TYR-TRP-ALA-GLN-LEU-ALA-SER (protein) E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	O9E

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7F71 \| pdb_00007f71	Download File View File

Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with peptidoglycan sugar moiety and glutamate

Kumar, P., Lamichhane, G.

(2022) Elife 11:

Released	2022-05-11
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	L,D-transpeptidase 2 (protein)
Unique Ligands	BGC, GLU, GOL

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4BRU | pdb_00004bru

4BRW | pdb_00004brw

4BY6 | pdb_00004by6

4PCJ | pdb_00004pcj

4R6N | pdb_00004r6n

4R6O | pdb_00004r6o

4R6P | pdb_00004r6p

4R6Q | pdb_00004r6q

4R6R | pdb_00004r6r

4TXD | pdb_00004txd

4Z7K | pdb_00004z7k

4Z7L | pdb_00004z7l

5A8C | pdb_00005a8c

5A8D | pdb_00005a8d

5HY7 | pdb_00005hy7

5IFE | pdb_00005ife

5J4T | pdb_00005j4t

5J4X | pdb_00005j4x

5J50 | pdb_00005j50

5J51 | pdb_00005j51

5JM1 | pdb_00005jm1

6FOP | pdb_00006fop

6H22 | pdb_00006h22

6Y4Q | pdb_00006y4q

7F71 | pdb_00007f71