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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Handel, T.M."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Homo sapiens (21)
	Klebsiella pneumoniae (7)
	Streptomyces clavuligerus (7)
	Lama glama (2)
	Tequatrovirus T4 (2)
	Clostridium pasteurianum (1)
	Human herpesvirus 8 strain GK18 (1)

Taxonomy

	Eukaryota (20)
	Bacteria (8)
	Duplodnaviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (8)
	ELECTRON MICROSCOPY (7)
	SOLUTION SCATTERING (1)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (3)
	2005 - 2009 (6)
	2010 - 2014 (3)
	2015 - 2019 (3)
	2020 - 2024 (7)

Enzyme Classification Name

Hydrolases (9)

Membrane Protein Annotation

	OPM (10)
	PDBTM (10)
	mpstruc (8)
	MemProtMD (3)

Symmetry Type

	Asymmetric (23)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a+b) (17)
	Multi-domain proteins (alpha and beta) (5)
	All beta proteins (2)
	Artifacts (3)

AllSelected

1 to 25 of 28 Structures

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1B2T \| pdb_00001b2t	Download File View File

SOLUTION STRUCTURE OF THE CX3C CHEMOKINE DOMAIN OF FRACTALKINE

Handel, T.M., Mizoue, L.S., Bazan, J.F., Johnson, E.C.

(1999) Biochemistry 38: 1402-1414

Released	1999-04-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (FRACTALKINE) (protein)

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1C3T \| pdb_00001c3t	Download File View File

ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURAL SPECIFICITY

Lazar, G.A., Johnson, E.C., Desjarlais, J.R., Handel, T.M.

(1999) Protein Sci 8: 2598-2610

Released	1999-08-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (1D8 UBIQUITIN) (protein)

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1DOK \| pdb_00001dok	Download File View File

MONOCYTE CHEMOATTRACTANT PROTEIN 1, P-FORM

Lubkowski, J., Bujacz, G., Boque, L., Wlodawer, A., Domaille, P.J., Handel, T.M.

(1997) Nat Struct Biol 4: 64-69

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	MONOCYTE CHEMOATTRACTANT PROTEIN 1 (protein)
Unique Ligands	SO4

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1DOM \| pdb_00001dom	Download File View File

SOLUTION STRUCTURE OF THE MONOCYTE CHEMOATTRACTANT PROTEIN-1 DIMER USING HETERONUCLEAR, NMR, MINIMIZED AVERAGE STRUCTURE

Domaille, P.J., Handel, T.M.

(1996) Biochemistry 35: 6569-6584

Released	1996-10-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MCP-1 (protein)

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1DON \| pdb_00001don	Download File View File

SOLUTION STRUCTURE OF THE MONOCYTE CHEMOATTRACTANT PROTEIN-1 DIMER USING HETERONUCLEAR, NMR, 20 STRUCTURES

Domaille, P.J., Handel, T.M.

(1996) Biochemistry 35: 6569-6584

Released	1996-10-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MCP-1 (protein)

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1F2L \| pdb_00001f2l	Download File View File

CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE

Hoover, D.M., Mizoue, L.S., Handel, T.M., Lubkowski, J.

(2000) J Biological Chem 275: 23187-23193

Released	2000-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FRACTALKINE (protein)

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1I1J \| pdb_00001i1j	Download File View File

STRUCTURE OF MELANOMA INHIBITORY ACTIVITY PROTEIN: A MEMBER OF A NEW FAMILY OF SECRETED PROTEINS

Lougheed, J.C., Holton, J.M., Alber, T., Bazan, J.F., Handel, T.M.

(2001) Proc Natl Acad Sci U S A 98: 5515-5520

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Homo sapiens
Macromolecule	MELANOMA DERIVED GROWTH REGULATORY PROTEIN (protein)

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1K0X \| pdb_00001k0x	Download File View File

Solution Structure of Melanoma Inhibitory Activity Protein

Lougheed, J.C., Domaille, P.J., Handel, T.M.

(2002) J Biomol NMR 22: 211-223

Released	2002-07-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Melanoma Derived Growth Regulatory Protein (protein)

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1UD7 \| pdb_00001ud7	Download File View File

SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7

Johnson, E.C., Lazar, G.A., Desjarlais, J.R., Handel, T.M.

(1999) Structure 7: 967-976

Released	1999-05-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (UBIQUITIN CORE MUTANT 1D7) (protein)

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2G2U \| pdb_00002g2u	Download File View File

Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex

Reynolds, K.A., Thomson, J.M., Corbett, K.D., Bethel, C.R., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.

(2006) J Biological Chem 281: 26745-26753

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)

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2G2W \| pdb_00002g2w	Download File View File

Crystal Structure of the SHV D104K Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex

Reynolds, K.A., Thomson, J.M., Corbett, K.D., Bethel, C.R., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.

(2006) J Biological Chem 281: 26745-26753

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)

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2KUM \| pdb_00002kum	Download File View File

Solution structure of the human chemokine CCL27

Kirkpatrick, J.P., Jansma, A., Hsu, A., Handel, T.M., Nietlispach, D.

(2010) J Biological Chem 285: 14424-14437

Released	2010-03-02
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-C motif chemokine 27 (protein)

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2L9H \| pdb_00002l9h	Download File View File

Oligomeric Structure of the Chemokine CCL5/RANTES from NMR, MS, and SAXS Data

Wang, X., Watson, C.M., Sharp, J.S., Handel, T.M., Prestegard, J.H.

(2011) Structure 19: 1138-1148

Released	2011-06-22
Method	SOLUTION NMR SOLUTION SCATTERING
Organisms	Homo sapiens
Macromolecule	C-C motif chemokine 5 (protein)

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3C4O \| pdb_00003c4o	Download File View File

Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) E73M/S130K/S146M complex

Reynolds, K.A., Hanes, M.S., Thomson, J.M., Antczak, A.J., Berger, J.M., Bonomo, R.A., Kirsch, J.F., Handel, T.M.

(2008) J Mol Biology 382: 1265-1275

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)
Unique Ligands	SO4

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3C4P \| pdb_00003c4p	Download File View File

Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) E73M complex

Reynolds, K.A., Hanes, M.S., Thomson, J.M., Antczak, A.J., Berger, J.M., Bonomo, R.A., Kirsch, J.F., Handel, T.M.

(2008) J Mol Biology 382: 1265-1275

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)
Unique Ligands	SO4

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3E2K \| pdb_00003e2k	Download File View File

Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)

Hanes, M.S., Jude, K.M., Berger, J.M., Bonomo, R.A., Handel, T.M.

(2009) Biochemistry 48: 9185-9193

Released	2009-08-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase inhibitory protein (protein) Carbapenemase (protein)

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3E2L \| pdb_00003e2l	Download File View File

Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)

Hanes, M.S., Jude, K.M., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.

(2009) Biochemistry 48: 9185-9193

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase inhibitory protein (protein) Carbapenemase (protein)

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3N4I \| pdb_00003n4i	Download File View File

Crystal structure of the SHV-1 D104E beta-lactamase/beta-lactamase inhibitor protein (BLIP) complex

Hanes, M.S., Reynolds, K.A., McNamara, C., Ghosh, P., Bonomo, R.A., Kirsch, J.F., Handel, T.M.

(2011) Proteins 79: 1267-1276

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)

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4RWS \| pdb_00004rws	Download File View File

Crystal structure of CXCR4 and viral chemokine antagonist vMIP-II complex (PSI Community Target)

Qin, L., Kufareva, I., Holden, L., Wang, C., Zheng, Y., Wu, H., Fenalti, G., Han, G.W., Cherezov, V., Abagyan, R., Stevens, R.C., Handel, T.M., GPCR Network (GPCR)

(2015) Science 347: 1117-1122

Released	2015-02-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Human herpesvirus 8 strain GK18 Tequatrovirus T4
Macromolecule	C-X-C chemokine receptor type 4/Endolysin chimeric protein (protein) Viral macrophage inflammatory protein 2 (protein)

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5T1A \| pdb_00005t1a	Download File View File

Structure of CC Chemokine Receptor 2 with Orthosteric and Allosteric Antagonists

Zheng, Y., Qin, L., Ortiz Zacarias, N.V., de Vries, H., Han, G.W., Gustavsson, M., Dabros, M., Zhao, C., Cherney, R.J., Carter, P., Stamos, D., Abagyan, R., Cherezov, V., Stevens, R.C., IJzerman, A.P., Heitman, L.H., Tebben, A., Kufareva, I., Handel, T.M.

(2016) Nature 540: 458-461

Released	2016-12-14
Method	X-RAY DIFFRACTION 2.806 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Chimera protein of CC chemokine receptor type 2 isoform B and T4-lysozyme,Lysozyme (protein)
Unique Ligands	73R, OLC, SO4, VT5, ZN

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5UIW \| pdb_00005uiw	Download File View File

Crystal Structure of CC Chemokine Receptor 5 (CCR5) in complex with high potency HIV entry inhibitor 5P7-CCL5

Zheng, Y., Qin, L., Han, G.W., Gustavsson, M., Kawamura, T., Stevens, R.C., Cherezov, V., Kufareva, I., Handel, T.M.

(2017) Immunity 46: 1005-1017.e5

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.204 Å
Organisms	Clostridium pasteurianum Homo sapiens
Macromolecule	C-C chemokine receptor type 5,Rubredoxin chimera (protein) C-C motif chemokine 5 (protein)
Unique Ligands	OLA, OLC, ZN

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7SK3 \| pdb_00007sk3	Download File View File

Cryo-EM structure of ACKR3 in complex with CXCL12, an intracellular Fab, and an extracellular Fab

Yen, Y.C., Schafer, C.T., Gustavsson, M., Handel, T.M., Tesmer, J.J.G.

(2022) Sci Adv 8: eabn8063-eabn8063

Released	2022-07-27
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR

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7SK4 \| pdb_00007sk4	Download File View File

Cryo-EM structure of ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ, an intracellular Fab, and an extracellular Fab

Yen, Y.C., Schafer, C.T., Gustavsson, M., Handel, T.M., Tesmer, J.J.G.

(2022) Sci Adv 8: eabn8063-eabn8063

Released	2022-07-27
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR

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7SK5 \| pdb_00007sk5	Download File View File

Cryo-EM structure of ACKR3 in complex with CXCL12 and an intracellular Fab

Yen, Y.C., Schafer, C.T., Gustavsson, M., Handel, T.M., Tesmer, J.J.G.

(2022) Sci Adv 8: eabn8063-eabn8063

Released	2022-07-27
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Anti-Fab nanobody (protein) Atypical chemokine receptor 3 (protein) CID24 Fab heavy chain (protein) CID24 Fab light chain (protein) Stromal cell-derived factor 1 (protein)
Unique Ligands	CLR

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7SK6 \| pdb_00007sk6	Download File View File

Cryo-EM structure of human ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ and an intracellular Fab

Yen, Y.C., Schafer, C.T., Gustavsson, M., Handel, T.M., Tesmer, J.J.G.

(2022) Sci Adv 8: eabn8063-eabn8063

Released	2022-07-27
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Atypical chemokine receptor 3 (protein) CID24 Fab heavy chain (protein) CID24 Fab light chain (protein) Stromal cell-derived factor 1 (protein)

1 to 25 of 28 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B2T | pdb_00001b2t

1C3T | pdb_00001c3t

1DOK | pdb_00001dok

1DOM | pdb_00001dom

1DON | pdb_00001don

1F2L | pdb_00001f2l

1I1J | pdb_00001i1j

1K0X | pdb_00001k0x

1UD7 | pdb_00001ud7

2G2U | pdb_00002g2u

2G2W | pdb_00002g2w

2KUM | pdb_00002kum

2L9H | pdb_00002l9h

3C4O | pdb_00003c4o

3C4P | pdb_00003c4p

3E2K | pdb_00003e2k

3E2L | pdb_00003e2l

3N4I | pdb_00003n4i

4RWS | pdb_00004rws

5T1A | pdb_00005t1a

5UIW | pdb_00005uiw

7SK3 | pdb_00007sk3

7SK4 | pdb_00007sk4

7SK5 | pdb_00007sk5

7SK6 | pdb_00007sk6