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Atomic model for Turnip mosaic virus (TuMV)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ODV
Sample Turnip mosaic virus
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 194432 Reported Resolution (Å) 5.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 4 Angular Rotation -40.8
Map-Model Fitting and Refinement Id 1 (5ODV) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value 270 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 2 CTF CORRECTION CTFFIND 3 MODEL FITTING Coot INITIAL EULER ASSIGNMENT RELION 2 FINAL EULER ASSIGNMENT RELION 2 CLASSIFICATION RELION 2 RECONSTRUCTION RELION 2 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY 444678