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Structure of Transferase mutant-C21S,C199S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5H60
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 290 0.8M LiCl2, 0.1M Tris-HCl (pH8.5), 8%(w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.55 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.82 α = 90 b = 95.52 β = 90 c = 120.08 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2015-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 1.1 Photon Factory BL-1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 67.8 99.7 0.111 15.5 13.6 45767
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 0.941
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5H60 2.1 44.42 43743 2311 99.47 0.26239 0.26053 0.2642 0.29806 0.301 RANDOM 47.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.543 r_dihedral_angle_4_deg 17.436 r_dihedral_angle_3_deg 16.218 r_long_range_B_refined 8.276 r_long_range_B_other 8.274 r_dihedral_angle_1_deg 6.352 r_scangle_other 5.677 r_mcangle_it 5.036 r_mcangle_other 5.035 r_scbond_it 3.843
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.543 r_dihedral_angle_4_deg 17.436 r_dihedral_angle_3_deg 16.218 r_long_range_B_refined 8.276 r_long_range_B_other 8.274 r_dihedral_angle_1_deg 6.352 r_scangle_other 5.677 r_mcangle_it 5.036 r_mcangle_other 5.035 r_scbond_it 3.843 r_scbond_other 3.842 r_mcbond_it 3.464 r_mcbond_other 3.464 r_angle_refined_deg 1.219 r_angle_other_deg 1.007 r_chiral_restr 0.059 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4662 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling REFMAC phasing