6AI4 | pdb_00006ai4

Structure of Transferase mutant-C21S,C199S

PDB DOI: https://doi.org/10.2210/pdb6AI4/pdb

Classification: TRANSFERASE
Organism(s): Escherichia coli
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): Yes

Deposited: 2018-08-21 Released: 2018-10-24
Deposition Author(s): Park, J.B., Yoo, Y., Kim, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.298 (Depositor), 0.301 (DCC)
R-Value Work:
0.261 (Depositor), 0.264 (DCC)
R-Value Observed:
0.262 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Transferase mutant-C21S,C199S

Park, J.B., Yoo, Y., Kim, J.

To be published.

Macromolecule Content

Total Structure Weight: 76.15 kDa
Atom Count: 4,799
Modeled Residue Count: 564
Deposited Residue Count: 652
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-LEE encoded effector protein NleB	A, B	326	Escherichia coli	Mutation(s): 2 Gene Names: nleB EC: 2.4.1
UniProt
Find proteins for A0A023YYV9 (Escherichia coli O145:H28 (strain RM12581)) Explore A0A023YYV9 Go to UniProtKB: A0A023YYV9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A023YYV9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.298 (Depositor), 0.301 (DCC)
R-Value Work: 0.261 (Depositor), 0.264 (DCC)
R-Value Observed: 0.262 (Depositor)

Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.82	α = 90
b = 95.52	β = 90
c = 120.08	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
REFMAC	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-10-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-10-24
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.