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A/Texas/50/2012(H3N2) Influenza hemagglutinin in complex with K03.12 Fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4O5N PDB entries 4O5N, 4WUK, 4HKX, 3TNN experimental model PDB 4WUK PDB entries 4O5N, 4WUK, 4HKX, 3TNN experimental model PDB 4HKX PDB entries 4O5N, 4WUK, 4HKX, 3TNN experimental model PDB 3TNN PDB entries 4O5N, 4WUK, 4HKX, 3TNN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 291.15 100 mM sodium citrate/citric acid, pH 5.5, 20% w/v PEG3000
Crystal Properties Matthews coefficient Solvent content 3.14 60.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.8 α = 90 b = 325.12 β = 97.63 c = 156.99 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.999876 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.17 0.2753 0.2967 0.1077 0.985 8.29 7.5 182963 46.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.693 99.78 2.635 2.84 1.036 0.367 1.19 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB entries 4O5N, 4WUK, 4HKX, 3TNN 2.6 49.413 1.34 182849 9066 99.18 0.241 0.24 0.2381 0.2621 0.2595
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.872 f_angle_d 0.869 f_chiral_restr 0.073 f_plane_restr 0.01 f_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33095 Nucleic Acid Atoms Solvent Atoms 722 Heterogen Atoms 565
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing