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Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain F598H mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3S2X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.2 M Citrate Sodium PH4.6, 1.6 M Sodium phosphate monobasic, 0.4 M Potassium phosphate dibasic
Crystal Properties Matthews coefficient Solvent content 2.22 44.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.512 α = 90 b = 86.601 β = 92.15 c = 86.762 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU 2016-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.987 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.6 15.76 3.3 24711
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 99.6 0.564 2.56 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3S2X 2.2 43.34 23435 1256 98.25 0.17568 0.17289 0.1773 0.22803 0.2313 RANDOM 32.427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.4 0.07 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.562 r_dihedral_angle_4_deg 19.432 r_dihedral_angle_3_deg 15.393 r_long_range_B_refined 6.826 r_long_range_B_other 6.806 r_dihedral_angle_1_deg 6.351 r_scangle_other 5.816 r_scbond_it 3.903 r_scbond_other 3.902 r_mcangle_it 3.507
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.562 r_dihedral_angle_4_deg 19.432 r_dihedral_angle_3_deg 15.393 r_long_range_B_refined 6.826 r_long_range_B_other 6.806 r_dihedral_angle_1_deg 6.351 r_scangle_other 5.816 r_scbond_it 3.903 r_scbond_other 3.902 r_mcangle_it 3.507 r_mcangle_other 3.506 r_mcbond_it 2.45 r_mcbond_other 2.448 r_angle_refined_deg 1.849 r_angle_other_deg 0.909 r_chiral_restr 0.109 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3858 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing