3S2X | pdb_00003s2x

Structure of acetyl-Coenzyme A synthase Alpha subunit C-terminal domain

PDB DOI: https://doi.org/10.2210/pdb3S2X/pdb

Classification: TRANSFERASE
Organism(s): Neomoorella thermoacetica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-05-17 Released: 2011-07-27
Deposition Author(s): Li, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free:
0.264 (Depositor)
R-Value Work:
0.221 (Depositor), 0.221 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 3S2X

This is version 1.1 of the entry. See complete history.

Literature

Insights into the Mechanistic Role of the [Fe(4) S(4) ] Cubane in the A-Cluster {[Fe(4) S(4) ]-(SR)-[Ni(p) Ni(d) ]} of Acetyl-Coenzyme A Synthase.

Liu, Y., Wang, F., Li, P., Tan, X.

(2011) Chembiochem 12: 1417-1421

PubMed: 21626638 Search on PubMed
DOI: https://doi.org/10.1002/cbic.201100101
Primary Citation Related Structures:
3S2X

Organizational Affiliation

Department of Chemistry and Institutes of Biomedical Sciences, Fudan University, Shanghai, China.

Macromolecule Content

Total Structure Weight: 29.85 kDa
Atom Count: 2,023
Modeled Residue Count: 265
Deposited Residue Count: 274
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
acetyl-CoA synthase subunit alpha	A, B	137	Neomoorella thermoacetica	Mutation(s): 0 EC: 2.3.1.169
UniProt
Find proteins for P27988 (Neomoorella thermoacetica) Explore P27988 Go to UniProtKB: P27988
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P27988
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NI Query on NI Download:Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain E [auth B] SDF format, chain D [auth A] SDF format, chain C [auth A] MOL2 format, chain F [auth B] MOL2 format, chain E [auth B] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] mmCIF format, chain F [auth B] mmCIF format, chain E [auth B] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A]	C [auth A], D [auth A], E [auth B], F [auth B]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.264 (Depositor)
R-Value Work: 0.221 (Depositor), 0.221 (DCC)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 129.04	α = 90
b = 129.04	β = 90
c = 46.03	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
PHENIX	model building
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-07-27

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-07-27
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.