☰ Navigation Tabs
Crystal Structure of co-chaperonin, GroES (Xoo4289) from Xanthomonas oryzae pv. oryzae KACC10331
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNR PDB ENTRY 1WNR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.1 287 0.2M Sodium citrate pH 4.1, 16% PEG 400, 0.2M Li2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.19 43.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.41 α = 90 b = 64.41 β = 90 c = 36.5 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A 1.00000 PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 55.78 94.52 6225 5590 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.97 2.08 98.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WNR 1.97 32.21 6225 5590 271 94.52 0.21722 0.21722 0.21394 0.2184 0.29163 0.287 RANDOM 36.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.01 -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.34 r_dihedral_angle_4_deg 23.39 r_dihedral_angle_3_deg 15.906 r_dihedral_angle_1_deg 8.399 r_scangle_it 6.099 r_scbond_it 3.323 r_mcangle_it 2.519 r_angle_refined_deg 2.17 r_mcbond_it 1.357 r_angle_other_deg 1.049
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.34 r_dihedral_angle_4_deg 23.39 r_dihedral_angle_3_deg 15.906 r_dihedral_angle_1_deg 8.399 r_scangle_it 6.099 r_scbond_it 3.323 r_mcangle_it 2.519 r_angle_refined_deg 2.17 r_mcbond_it 1.357 r_angle_other_deg 1.049 r_mcbond_other 0.23 r_chiral_restr 0.112 r_bond_refined_d 0.027 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 559 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling