3NX6 | pdb_00003nx6

Crystal Structure of co-chaperonin, GroES (Xoo4289) from Xanthomonas oryzae pv. oryzae KACC10331

PDB DOI: https://doi.org/10.2210/pdb3NX6/pdb

Classification: CHAPERONE
Organism(s): Xanthomonas oryzae pv. oryzae KACC 10331
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2010-07-13 Released: 2010-07-28
Deposition Author(s): Natarajan, S., Doan, T.T.N., Kang, L.-W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.97 Å
R-Value Free:
0.292 (Depositor), 0.287 (DCC)
R-Value Work:
0.214 (Depositor), 0.218 (DCC)
R-Value Observed:
0.217 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of co-chaperonin, GroES (Xoo4289) from Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Doan, T.T.N., Kang, L.-W.

To be published.

Macromolecule Content

Total Structure Weight: 9.97 kDa
Atom Count: 596
Modeled Residue Count: 75
Deposited Residue Count: 95
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
10kDa chaperonin	A	95	Xanthomonas oryzae pv. oryzae KACC 10331	Mutation(s): 1 Gene Names: Xoo4289
UniProt
Find proteins for Q5GUT0 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)) Explore Q5GUT0 Go to UniProtKB: Q5GUT0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5GUT0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.97 Å
R-Value Free: 0.292 (Depositor), 0.287 (DCC)
R-Value Work: 0.214 (Depositor), 0.218 (DCC)
R-Value Observed: 0.217 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.41	α = 90
b = 64.41	β = 90
c = 36.5	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-07-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-07-28
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.