1WNR | pdb_00001wnr

Crystal structure of the Cpn10 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb1WNR/pdb

Classification: CHAPERONE
Organism(s): Thermus thermophilus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2004-08-09 Released: 2004-12-07
Deposition Author(s): Numoto, N., Kita, A., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.275 (Depositor)
R-Value Work:
0.253 (Depositor)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the Co-chaperonin Cpn10 from Thermus thermophilus HB8

Numoto, N., Kita, A., Miki, K.

(2005) Proteins 58: 498-500

PubMed: 15558581 Search on PubMed
DOI: https://doi.org/10.1002/prot.20317
Primary Citation Related Structures:
1WNR

Organizational Affiliation

Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

Macromolecule Content

Total Structure Weight: 72.18 kDa
Atom Count: 4,211
Modeled Residue Count: 545
Deposited Residue Count: 658
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
10 kDa chaperonin	A, B, C, D, E A, B, C, D, E, F, G	94	Thermus thermophilus	Mutation(s): 0
UniProt
Find proteins for P61493 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore P61493 Go to UniProtKB: P61493
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P61493
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.275 (Depositor)
R-Value Work: 0.253 (Depositor)

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 192.881	α = 90
b = 192.881	β = 90
c = 109.662	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-12-07

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-12-07
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-10-25
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.