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3D NMR structure of the transmembrane domain of the full-length inner membrane protein YgaP from Escherichia coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 2 3D HNCA 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 3 3D HN(CO)CA 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 4 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 5 2D 1H-15N HSQC 0.5 mM [U-100% 13C; U-100% 15N] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 6 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 7 3D 1H-13C NOESY 0.5 mM [U-100% 13C; U-100% 15N] YgaP 95% H2O/5% D2O 0 7.0 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing XEASY
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment XEASY Bartels et al. 2 structure solution CYANA Guntert, Mumenthaler and Wuthrich 3 refinement CYANA Guntert, Mumenthaler and Wuthrich