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FaeG from F4ac ETEC strain GIS26, produced in tobacco plant chloroplast
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J6G PDB ENTRY 2J6G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 30 % PEG8000, 0.1 M NA CACODYLATE, 0.2 M NH4H2PO4
Crystal Properties Matthews coefficient Solvent content 2.5 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.165 α = 90 b = 91.232 β = 90 c = 108.434 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 35 99.9 0.09 14.25 6.1 42391
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100 0.45 3.77 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J6G 1.9 18.45 42391 2248 100 0.185 0.183 0.1848 0.226 0.2275 RANDOM 17.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.587 r_dihedral_angle_4_deg 14.953 r_dihedral_angle_3_deg 11.453 r_dihedral_angle_1_deg 6.315 r_scangle_it 3.156 r_scbond_it 2.122 r_angle_refined_deg 1.426 r_mcangle_it 1.402 r_mcbond_it 0.838 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.587 r_dihedral_angle_4_deg 14.953 r_dihedral_angle_3_deg 11.453 r_dihedral_angle_1_deg 6.315 r_scangle_it 3.156 r_scbond_it 2.122 r_angle_refined_deg 1.426 r_mcangle_it 1.402 r_mcbond_it 0.838 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.149 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3726 Nucleic Acid Atoms Solvent Atoms 340 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing