X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1PJQPDB ENTRY 1PJQ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.6290PEG 20000, sodium citrate, lithium sulfate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
3.4564.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 218.097α = 90
b = 218.097β = 90
c = 190.341γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHmirrorsMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.20.978SRSPX14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.719.841000.0570.07719.527.793787412173158.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.81000.4160.4863.277.212142

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1PJQ2.719.84115288115288609999.720.215260.212860.26032RANDOM30.959
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.030.03-0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.704
r_scangle_it2.885
r_angle_refined_deg1.744
r_scbond_it1.673
r_mcangle_it1.393
r_mcbond_it0.762
r_symmetry_hbond_refined0.34
r_symmetry_vdw_refined0.281
r_nbd_refined0.247
r_xyhbond_nbd_refined0.191
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.704
r_scangle_it2.885
r_angle_refined_deg1.744
r_scbond_it1.673
r_mcangle_it1.393
r_mcbond_it0.762
r_symmetry_hbond_refined0.34
r_symmetry_vdw_refined0.281
r_nbd_refined0.247
r_xyhbond_nbd_refined0.191
r_chiral_restr0.113
r_bond_refined_d0.012
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms22413
Nucleic Acid Atoms
Solvent Atoms523
Heterogen Atoms468

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing