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 1S4D | pdb_00001s4d

Crystal Structure Analysis of the S-adenosyl-L-methionine dependent uroporphyrinogen-III C-methyltransferase SUMT

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
L [auth M]d1s4dm_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
K [auth L]d1s4dl_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
J [auth K]d1s4dk_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
I [auth J]d1s4dj_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
H [auth I]d1s4di_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
G [auth H]d1s4dh_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
F [auth G]d1s4dg_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
E [auth F]d1s4df_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
D [auth E]d1s4de_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
C [auth D]d1s4dd_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
Bd1s4db_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)
Ad1s4da_ Alpha and beta proteins (a/b) Tetrapyrrole methylase Tetrapyrrole methylase Tetrapyrrole methylase Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) (Pseudomonas denitrificans (nom. rej.) ) [TaxId: 43306 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth M]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2B (2022-06-29)
ASCOP2 FamilyTetrapyrrole methylase 8057827 4000056 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTetrapyrrole methylase 8057828 3000017 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth M]e1s4dM1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
K [auth L]e1s4dL1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
J [auth K]e1s4dK1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
I [auth J]e1s4dJ1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
H [auth I]e1s4dI1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
G [auth H]e1s4dH1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
F [auth G]e1s4dG1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
E [auth F]e1s4dF1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
D [auth E]e1s4dE1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
C [auth D]e1s4dD1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
Be1s4dB1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)
Ae1s4dA1 A: alpha arraysX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L [auth M]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
L [auth M]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
K [auth L]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
K [auth L]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
J [auth K]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
J [auth K]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
I [auth J]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
I [auth J]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
H [auth I]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
H [auth I]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
G [auth H]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
G [auth H]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
F [auth G]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
F [auth G]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
E [auth F]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
E [auth F]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
D [auth E]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
D [auth E]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
C [auth D]3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
C [auth D]3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
B3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
B3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)
A3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase domain 1CATH (4.3.0)
A3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase Domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Uroporphyrin-III C-methyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR035996Tetrapyrrole methylase superfamilyHomologous Superfamily
IPR014777Tetrapyrrole methylase, subdomain 1Homologous Superfamily
IPR003043Uroporphiryn-III C-methyltransferase, conserved siteConserved Site
IPR014776Tetrapyrrole methylase, subdomain 2Homologous Superfamily
IPR000878Tetrapyrrole methylaseDomain
IPR006366Uroporphyrin-III C-methyltransferaseDomain
IPR050161Siroheme/cobalamin biosynthesis enzymeFamily