9ATN

NMR structure of the MLL4 PHD2/3 fingers in complex with ASXL2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 60 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers.

Zhang, Y.Xie, G.Lee, J.E.Zandian, M.Sudarshan, D.Estavoyer, B.Benz, C.Viita, T.Asgaritarghi, G.Lachance, C.Messmer, C.Simonetti, L.Sinha, V.K.Lambert, J.P.Chen, Y.W.Wang, S.P.Ivarsson, Y.Affar, E.B.Cote, J.Ge, K.Kutateladze, T.G.

(2024) Nat Commun 15: 4883-4883

  • DOI: https://doi.org/10.1038/s41467-024-49391-x
  • Primary Citation of Related Structures:  
    9ATN

  • PubMed Abstract: 

    The human methyltransferase and transcriptional coactivator MLL4 and its paralog MLL3 are frequently mutated in cancer. MLL4 and MLL3 monomethylate histone H3K4 and contain a set of uncharacterized PHD fingers. Here, we report a novel function of the PHD2 and PHD3 (PHD2/3) fingers of MLL4 and MLL3 that bind to ASXL2, a component of the Polycomb repressive H2AK119 deubiquitinase (PR-DUB) complex. The structure of MLL4 PHD2/3 in complex with the MLL-binding helix (MBH) of ASXL2 and mutational analyses reveal the molecular mechanism which is conserved in homologous ASXL1 and ASXL3. The native interaction of the Trithorax MLL3/4 complexes with the PR-DUB complex in vivo depends solely on MBH of ASXL1/2, coupling the two histone modifying activities. ChIP-seq analysis in embryonic stem cells demonstrates that MBH of ASXL1/2 is required for the deubiquitinase BAP1 recruitment to MLL4-bound active enhancers. Our findings suggest an ASXL1/2-dependent functional link between the MLL3/4 and PR-DUB complexes.


  • Organizational Affiliation

    Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone-lysine N-methyltransferase 2D100Homo sapiensMutation(s): 0 
Gene Names: KMT2DALRMLL2MLL4
EC: 2.1.1.364
UniProt & NIH Common Fund Data Resources
Find proteins for O14686 (Homo sapiens)
Explore O14686 
Go to UniProtKB:  O14686
GTEx:  ENSG00000167548 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14686
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Polycomb group protein ASXL219Homo sapiensMutation(s): 0 
Gene Names: ASXL2ASXH2KIAA1685
UniProt & NIH Common Fund Data Resources
Find proteins for Q76L83 (Homo sapiens)
Explore Q76L83 
Go to UniProtKB:  Q76L83
PHAROS:  Q76L83
GTEx:  ENSG00000143970 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ76L83
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 60 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release