Annotations: 9ATN

NMR structure of the MLL4 PHD2/3 fingers in complex with ASXL2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GFO_IDH_MocA	e9atnA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: GFO_IDH_MocA	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00628	PHD-finger (PHD)	PHD-finger	PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Histone-lysine N-methyltransferase 2D	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity methyltransferase activity catalytic activity histone H3K4 monomethyltransferase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	developmental process sexual reproduction cellular developmental process reproductive process oogenesis multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation gamete generation cell differentiation anatomical structure development germ cell development developmental process sexual reproduction cellular developmental process reproductive process oogenesis multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation gamete generation cell differentiation anatomical structure development germ cell development cellular process response to stimulus response to hormone response to endogenous stimulus response to chemical response to estrogen cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis beta-catenin-TCF complex assembly methylation metabolic process regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process positive regulation of cellular process developmental cell growth developmental growth growth cell growth oocyte development oocyte growth oocyte differentiation RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process negative regulation of biological process chromatin organization negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction intracellular receptor signaling pathway response to lipid signaling positive regulation of intracellular estrogen receptor signaling pathway regulation of signal transduction hormone-mediated signaling pathway intracellular signal transduction cell communication positive regulation of response to stimulus cellular response to endogenous stimulus regulation of intracellular signal transduction response to steroid hormone regulation of intracellular estrogen receptor signaling pathway regulation of intracellular steroid hormone receptor signaling pathway signal transduction nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus steroid hormone receptor signaling pathway cellular response to hormone stimulus regulation of signaling positive regulation of intracellular signal transduction estrogen receptor signaling pathway positive regulation of intracellular steroid hormone receptor signaling pathway cellular response to chemical stimulus regulation of response to stimulus cellular response to lipid regulation of cell communication nuclear receptor-mediated signaling pathway positive regulation of signaling positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle MLL3/4 complex protein-containing complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle MLL3/4 complex protein-containing complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
B	Polycomb group protein ASXL2	DNA binding binding nucleic acid binding protein binding signaling receptor binding peroxisome proliferator activated receptor binding chromatin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction signal transduction cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction signal transduction positive regulation of peroxisome proliferator activated receptor signaling pathway positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction peroxisome proliferator activated receptor signaling pathway regulation of response to stimulus regulation of cell communication regulation of peroxisome proliferator activated receptor signaling pathway cellular process nuclear receptor-mediated signaling pathway positive regulation of signaling developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis fat cell differentiation positive regulation of fat cell differentiation regulation of developmental process cellular developmental process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation regulation of fat cell differentiation positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex intracellular organelle cellular anatomical structure organelle PR-DUB complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex intracellular organelle cellular anatomical structure organelle PR-DUB complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037890	KMT2D, SET domain	Domain
A	IPR001965	Zinc finger, PHD-type	Domain
A	IPR046341	SET domain superfamily	Homologous Superfamily
A	IPR047000	KMT2D, PHD3 domain	Domain
A	IPR001214	SET domain	Domain
A	IPR019787	Zinc finger, PHD-finger	Domain
A	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A	IPR041964	KMT2D, ePHD2 domain	Domain
A	IPR003616	Post-SET domain	Domain
A	IPR034732	Extended PHD (ePHD) domain	Domain
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR003889	FY-rich, C-terminal	Conserved Site
A	IPR041961	KMT2D, ePHD1 domain	Domain
A	IPR046999	KMT2D, PHD5 domain	Domain
A	IPR003888	FY-rich, N-terminal	Conserved Site
A	IPR001841	Zinc finger, RING-type	Domain
A	IPR009071	High mobility group box domain	Domain
A	IPR036910	High mobility group box domain superfamily	Homologous Superfamily
B	IPR026905	Protein ASX-like, PHD domain	Domain
B	IPR024811	Polycomb protein ASX/ASX-like	Family
B	IPR044867	DEUBAD domain	Domain
B	IPR028020	ASX, DEUBAD domain	Domain
B	IPR007759	ASXL, HARE-HTH domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: O14686	Kabuki syndrome esophageal squamous cell carcinoma urinary bladder cancer follicular lymphoma diffuse large B-cell lymphoma male infertility T-cell non-Hodgkin lymphoma Sezary syndrome breast carcinoma Kabuki syndrome 1 benign breast phyllodes tumor prostate cancer Lymphoma, Large-Cell, Follicular adrenal medulla cancer osteoporosis Kabuki syndrome esophageal squamous cell carcinoma urinary bladder cancer follicular lymphoma diffuse large B-cell lymphoma male infertility T-cell non-Hodgkin lymphoma Sezary syndrome breast carcinoma Kabuki syndrome 1 benign breast phyllodes tumor prostate cancer Lymphoma, Large-Cell, Follicular adrenal medulla cancer osteoporosis benign neoplasm of adrenal gland breast cancer coloboma attention deficit hyperactivity disorder, inattentive type phyllodes tumor craniosynostosis malignant breast phyllodes tumor osteogenesis imperfecta bipolar disorder urinary bladder neoplasm cancer intellectual disability
B	: Q76L83	urinary bladder cancer acute myeloid leukemia intellectual disability myopathy pancreatic intraductal papillary-mucinous carcinoma Pick disease astrocytic tumor Bainbridge-Ropers syndrome exocrine pancreatic carcinoma glioblastoma malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm Shashi-Pena syndrome urinary bladder neoplasm urinary bladder cancer acute myeloid leukemia intellectual disability myopathy pancreatic intraductal papillary-mucinous carcinoma Pick disease astrocytic tumor Bainbridge-Ropers syndrome exocrine pancreatic carcinoma glioblastoma malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm Shashi-Pena syndrome urinary bladder neoplasm atrial fibrillation Becker muscular dystrophy gastric cancer hepatocellular carcinoma large cell medulloblastoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor dermatomyositis gastric carcinoma hydrocephalus malignant ependymoma