9VQU | pdb_00009vqu

The structure of DbOR67d-DbOrco in the Z11-bound state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation

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This is version 1.0 of the entry. See complete history

Literature

Cryo-EM structures of Drosophila OR67d-Orco complexes reveal insect pheromone sensing mechanism.

Wang, J.Yang, C.Chang, S.Jiao, D.Lin, J.Yang, X.Cai, W.Ma, D.Ding, Z.J.Huang, J.Huang, J.Fan, M.Hu, M.Wang, Y.Xu, H.Su, N.Guo, J.

(2026) Cell Res 

  • DOI: https://doi.org/10.1038/s41422-026-01264-2
  • Primary Citation Related Structures: 
    9VQO, 9VQS, 9VQT, 9VQU, 9VQV

  • PubMed Abstract: 

    Pheromones mediate intraspecific communication to regulate the physiology and behavior of animals, particularly insects. The detection of pheromones is initiated by the binding of pheromone molecules, e.g., 11-cis-vaccenyl acetate (cVA) in Drosophila, to specific receptor proteins in chemosensory neurons, but the underlying molecular mechanisms remain unclear. Here, we report structures of Drosophila pheromone receptor OR67d-Orco complexes in apo closed, pheromone-bound open, and synthetic agonist VUAA1-bound open conformations. OR67d and Orco assemble into a hetero-tetrameric channel with a 1:3 stoichiometry. In OR67d, the inverted L-shaped cVA or its analog binds into a deep and bent hydrophobic pocket, inducing both local and global conformational changes that lead to an asymmetrical opening of the channel gate. By comparison, VUAA1 binds to Orco instead of OR67d to cause a similar asymmetrical opening. Together, our studies reveal the structural basis for pheromone activation of hetero-tetrameric pheromone receptors.


  • Organizational Affiliation
    • Department of Neurology of the Fourth Affiliated Hospital, and Department of Biophysics, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.

Macromolecule Content 

  • Total Structure Weight: 206.51 kDa 
  • Atom Count: 12,730 
  • Modeled Residue Count: 1,592 
  • Deposited Residue Count: 1,832 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
OR67d in Drosophila Bipectinata386Drosophila bipectinataMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Orco in Drosophila Bipectinata
B, C, D
482Drosophila bipectinataMutation(s): 0 

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1ETW(
Subject of Investigation/LOI)

Query on A1ETW



Download:Ideal Coordinates CCD File
E [auth A][(~{Z})-icos-11-enyl] ethanoate
C22 H42 O2
PYVDPRZZYPCYBD-KHPPLWFESA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

Currently 9VQU does not have a validation slider image.



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2020YFA0908501

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-01
    Type: Initial release