9MT5 | pdb_00009mt5

Helical tail assembly of phage JohannRWettstein (Bas63)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.17 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Cryo-EM structure of bacteriophage Bas63 reveals structural conservation and diversity in the Felixounavirus genus.

Hodgkinson-Bean, J.Ayala, R.McJarrow-Keller, K.Cassin, L.Rutter, G.L.Crowe, A.J.M.Wolf, M.Bostina, M.

(2025) Sci Adv 11: eadx0790-eadx0790

  • DOI: https://doi.org/10.1126/sciadv.adx0790
  • Primary Citation Related Structures: 
    9MT4, 9MT5

  • PubMed Abstract: 

    The BASEL phage collection was developed to provide access to diverse bacteriophages, distinct from model phages. Escherichia phage JohannRWettstein (Bas63), a myophage in the collection, is a member of the subfamily Ounavirinae and the Felixounavirus genus. Using cryo-electron microscopy, we investigated Bas63's structure to explore its evolutionary relationships and functional adaptations. Our structures reveal a series of gene products: (i) a capsid decorated with β-tulip proteins at three-fold symmetry axes and a Hoc-like protein at hexamer centers, (ii) a conserved connector with an additional 12-fold ring of collar proteins that extend unique whisker proteins that are structurally related to podophage GP4 tail fibers, and (iii) a baseplate with long tail fibers resembling a contracted form of T4's long tail fibers. Sequence conservation analysis of Bas63 structural proteins across ICTV-recognized Felixounavirus' supports its role as a structural model for Felixounavirus evolution. This study advances the mechanistic understanding of phage architecture and reinforces the structural mosaicism of bacteriophages.


  • Organizational Affiliation
    • Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.

Macromolecule Content 

  • Total Structure Weight: 65.12 kDa 
  • Atom Count: 4,381 
  • Modeled Residue Count: 569 
  • Deposited Residue Count: 598 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tube protein148Escherichia phage JohannRWettsteinMutation(s): 0 
UniProt
Find proteins for A0AAE7VV62 (Escherichia phage JohannRWettstein)
Explore A0AAE7VV62 
Go to UniProtKB:  A0AAE7VV62
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AAE7VV62
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Structural protein450Escherichia phage JohannRWettsteinMutation(s): 0 
UniProt
Find proteins for A0AAE7VVP5 (Escherichia phage JohannRWettstein)
Explore A0AAE7VVP5 
Go to UniProtKB:  A0AAE7VVP5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AAE7VVP5
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.17 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Agriculture, Forestry and Fisheries (MAFF)JapanGD0696J004
Japan Society for the Promotion of Science (JSPS)Japan21K20645

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-19
    Type: Initial release
  • Version 1.1: 2025-11-26
    Changes: Data collection, Database references