9LE7 | pdb_00009le7

Coordinates of Cryo-EM structure of the Arabidopsis thaliana C4S4M4-type PSII supercomplex

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9LE7

This is version 1.0 of the entry. See complete history. 

Literature

Coordinates of Cryo-EM structure of the Arabidopsis thaliana C2S2M2-type PSII supercomplex

Chen, S.J.B., Wu, C., Wu, J.H., Sui, S.F., Zhang, L.X.

To be published.

Macromolecule Content 

  • Total Structure Weight: 2,271.41 kDa 
  • Atom Count: 146,846 
  • Modeled Residue Count: 13,676 
  • Deposited Residue Count: 15,102 
  • Unique protein chains: 22

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticA [auth 5],
C [auth 7],
TA [auth 9],
VA [auth AA]		266Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q39142 (Arabidopsis thaliana)
Explore Q39142 
Go to UniProtKB:  Q39142
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39142
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein 3, chloroplasticB [auth 6],
UA [auth 0]		243Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q9S7M0 (Arabidopsis thaliana)
Explore Q9S7M0 
Go to UniProtKB:  Q9S7M0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9S7M0
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticD [auth 8],
WA [auth AB]		212Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for A0A178WK60 (Arabidopsis thaliana)
Explore A0A178WK60 
Go to UniProtKB:  A0A178WK60
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A178WK60
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II CP47 reaction center proteinE [auth B],
PB [auth BE],
W [auth b],
XA [auth v]		508Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P56777 (Arabidopsis thaliana)
Explore P56777 
Go to UniProtKB:  P56777
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56777
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II D2 proteinF [auth D],
QB [auth BG],
X [auth d],
YA [auth 2]		352Arabidopsis thalianaMutation(s): 0 
EC: 1.10.3.9
UniProt
Find proteins for P56761 (Arabidopsis thaliana)
Explore P56761 
Go to UniProtKB:  P56761
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56761
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Cytochrome b559 subunit alphaG [auth E],
RB [auth BH],
Y [auth e],
ZA [auth 3]		83Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P56779 (Arabidopsis thaliana)
Explore P56779 
Go to UniProtKB:  P56779
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56779
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Cytochrome b559 subunit betaAB [auth 4],
H [auth F],
SB [auth BI],
Z [auth f]		39Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P62095 (Arabidopsis thaliana)
Explore P62095 
Go to UniProtKB:  P62095
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62095
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein 1, chloroplastic232Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P04778 (Arabidopsis thaliana)
Explore P04778 
Go to UniProtKB:  P04778
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04778
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein HBA [auth h],
CB [auth Av],
J [auth H],
UB [auth BK]		72Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P56780 (Arabidopsis thaliana)
Explore P56780 
Go to UniProtKB:  P56780
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56780
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein ICA [auth i],
DB [auth Aw],
K [auth I],
VB [auth BL]		36Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P62100 (Arabidopsis thaliana)
Explore P62100 
Go to UniProtKB:  P62100
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62100
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein KDA [auth k],
EB [auth Ay],
L [auth K],
WB [auth BN]		37Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P56782 (Arabidopsis thaliana)
Explore P56782 
Go to UniProtKB:  P56782
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56782
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein LEA [auth l],
FB [auth Az],
M [auth L],
XB [auth BO]		38Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P60129 (Arabidopsis thaliana)
Explore P60129 
Go to UniProtKB:  P60129
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60129
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein MFA [auth m],
GB [auth A1],
N [auth M],
YB [auth BP]		34Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P62109 (Arabidopsis thaliana)
Explore P62109 
Go to UniProtKB:  P62109
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62109
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein CP26, chloroplasticAC [auth BV],
HA [auth s],
IB [auth A6],
P [auth S]		232Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q9XF89 (Arabidopsis thaliana)
Explore Q9XF89 
Go to UniProtKB:  Q9XF89
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9XF89
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein TBC [auth BW],
IA [auth t],
JB [auth A7],
Q [auth T]		33Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P61839 (Arabidopsis thaliana)
Explore P61839 
Go to UniProtKB:  P61839
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61839
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II 5 kDa protein, chloroplasticCC [auth BX],
JA [auth u],
KB [auth A8],
R [auth U]		28Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q39195 (Arabidopsis thaliana)
Explore Q39195 
Go to UniProtKB:  Q39195
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39195
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center W protein, chloroplasticDC [auth BY],
KA [auth w],
LB [auth A0],
S [auth W]		54Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q39194 (Arabidopsis thaliana)
Explore Q39194 
Go to UniProtKB:  Q39194
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39194
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
(thale cress) hypothetical proteinEC [auth BZ],
LA [auth x],
MB [auth BA],
T [auth X]		42Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for A0A7G2E9B1 (Arabidopsis thaliana)
Explore A0A7G2E9B1 
Go to UniProtKB:  A0A7G2E9B1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7G2E9B1
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II reaction center protein ZGC [auth Bb],
NA [auth z],
OB [auth BC],
V [auth Z]		62Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P56790 (Arabidopsis thaliana)
Explore P56790 
Go to UniProtKB:  P56790
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56790
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II protein D1HC [auth R],
JC [auth BD],
OA [auth A],
QA [auth a]		352Arabidopsis thalianaMutation(s): 0 
EC: 1.10.3.9
UniProt
Find proteins for P83755 (Arabidopsis thaliana)
Explore P83755 
Go to UniProtKB:  P83755
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP83755
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
Photosystem II CP43 reaction center proteinIC [auth 1],
KC [auth BF],
PA [auth C],
RA [auth c]		459Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for P56778 (Arabidopsis thaliana)
Explore P56778 
Go to UniProtKB:  P56778
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP56778
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein CP29.1, chloroplasticLC [auth BU],
SA [auth r]		250Arabidopsis thalianaMutation(s): 0 
UniProt
Find proteins for Q07473 (Arabidopsis thaliana)
Explore Q07473 
Go to UniProtKB:  Q07473
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07473
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 16 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DGD

Query on DGD


Download:Ideal Coordinates CCD File
AP [auth C]
BP [auth C]
CFA [auth BF]
CH [auth H]
CP [auth C]
AP [auth C],
BP [auth C],
CFA [auth BF],
CH [auth H],
CP [auth C],
DFA [auth BF],
GP [auth a],
IQ [auth c],
JQ [auth c],
KAA [auth BK],
LEA [auth BD],
OL [auth h],
SP [auth a],
TCA [auth R],
TDA [auth 1],
UDA [auth 1],
VDA [auth 1],
WV [auth Av],
ZDA [auth BD],
ZN [auth A]
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
CHL

Query on CHL


Download:Ideal Coordinates CCD File
ACA [auth Ba]
AJ [auth Y]
AL [auth g]
AM [auth n]
BE [auth 7]
ACA [auth Ba],
AJ [auth Y],
AL [auth g],
AM [auth n],
BE [auth 7],
BJ [auth Y],
BL [auth g],
BM [auth n],
BX [auth A6],
CE [auth 7],
CJ [auth Y],
CL [auth g],
CS [auth 0],
CV [auth Au],
CX [auth A6],
DE [auth 7],
DI [auth S],
DJ [auth Y],
DS [auth 0],
DX [auth A6],
ECA [auth Ba],
EE [auth 7],
EN [auth y],
ES [auth 0],
EW [auth A2],
FCA [auth Ba],
FD [auth 6],
FE [auth 7],
FR [auth 9],
FS [auth 0],
GCA [auth Ba],
GS [auth 0],
GV [auth Au],
HCA [auth Ba],
HI [auth S],
HV [auth Au],
IBA [auth BV],
ICA [auth Ba],
IG [auth G],
II [auth S],
IN [auth y],
IV [auth Au],
IW [auth A2],
JD [auth 6],
JI [auth S],
JN [auth y],
JR [auth 9],
JV [auth Au],
JW [auth A2],
KD [auth 6],
KH [auth N],
KN [auth y],
KR [auth 9],
KV [auth Au],
KW [auth A2],
LD [auth 6],
LFA [auth BU],
LN [auth y],
LR [auth 9],
LT [auth AB],
LW [auth A2],
MBA [auth BV],
MC [auth 5],
MD [auth 6],
MFA [auth BU],
MG [auth G],
MM [auth s],
MN [auth y],
MR [auth 9],
MT [auth AB],
MW [auth A2],
NBA [auth BV],
ND [auth 6],
NFA [auth BU],
NG [auth G],
NR [auth 9],
NT [auth AB],
NZ [auth BH],
OBA [auth BV],
OG [auth G],
OH [auth N],
OT [auth AB],
PAA [auth BQ],
PG [auth G],
PH [auth N],
QC [auth 5],
QG [auth G],
QH [auth N],
QM [auth s],
QS [auth AA],
QX [auth BB],
QZ [auth BJ],
RC [auth 5],
RH [auth N],
RK [auth e],
RM [auth s],
RQ [auth r],
SC [auth 5],
SE [auth 8],
SH [auth N],
SM [auth s],
SQ [auth r],
TAA [auth BQ],
TC [auth 5],
TE [auth 8],
TFA [auth BU],
TL [auth n],
TQ [auth r],
UAA [auth BQ],
UC [auth 5],
UE [auth 8],
UK [auth g],
US [auth AA],
UX [auth BB],
UZ [auth BJ],
VAA [auth BQ],
VE [auth 8],
VI [auth Y],
VS [auth AA],
VX [auth BB],
VZ [auth BJ],
WAA [auth BQ],
WS [auth AA],
WX [auth BB],
WZ [auth BJ],
XAA [auth BQ],
XD [auth 7],
XL [auth n],
XS [auth AA],
XW [auth A6],
XX [auth BB],
XZ [auth BJ],
YK [auth g],
YL [auth n],
YR [auth 0],
YS [auth AA],
YX [auth BB],
YZ [auth BJ],
ZI [auth Y],
ZK [auth g],
ZL [auth n],
ZQ [auth r]
CHLOROPHYLL B
C55 H70 Mg N4 O6
MWVCRINOIIOUAU-UYSPMESUSA-M
CLA

Query on CLA


Download:Ideal Coordinates CCD File
AAA [auth BJ]
ABA [auth BQ]
AE [auth 7]
AG [auth D]
AK [auth b]
AAA [auth BJ],
ABA [auth BQ],
AE [auth 7],
AG [auth D],
AK [auth b],
AQ [auth c],
AR [auth r],
AS [auth 0],
AT [auth AA],
AU [auth v],
AX [auth A6],
AY [auth BB],
BAA [auth BJ],
BBA [auth BQ],
BCA [auth Ba],
BDA [auth R],
BG [auth D],
BK [auth b],
BQ [auth c],
BS [auth 0],
BT [auth AA],
BU [auth v],
BY [auth BB],
CAA [auth BJ],
CBA [auth BQ],
CCA [auth Ba],
CF [auth B],
CK [auth b],
CM [auth n],
CO [auth A],
CQ [auth c],
CT [auth AA],
CU [auth v],
CY [auth BB],
DAA [auth BJ],
DCA [auth Ba],
DEA [auth BD],
DF [auth B],
DK [auth b],
DL [auth g],
DM [auth n],
DO [auth A],
DQ [auth c],
DT [auth AA],
DU [auth v],
DV [auth Au],
DY [auth BB],
EEA [auth BD],
EF [auth B],
EH [auth I],
EI [auth S],
EJ [auth Y],
EL [auth g],
EM [auth n],
EO [auth A],
EQ [auth c],
EU [auth v],
EV [auth Au],
EX [auth A6],
FDA [auth 1],
FEA [auth BD],
FF [auth B],
FI [auth S],
FJ [auth Y],
FL [auth g],
FM [auth n],
FN [auth y],
FQ [auth c],
FU [auth v],
FV [auth Au],
FW [auth A2],
FX [auth A6],
GD [auth 6],
GDA [auth 1],
GE [auth 7],
GF [auth B],
GI [auth S],
GJ [auth Y],
GL [auth g],
GM [auth n],
GN [auth y],
GQ [auth c],
GR [auth 9],
GU [auth v],
GW [auth A2],
GX [auth A6],
HD [auth 6],
HDA [auth 1],
HE [auth 7],
HF [auth B],
HFA [auth BU],
HJ [auth Y],
HL [auth g],
HN [auth y],
HO [auth A],
HR [auth 9],
HS [auth 0],
HU [auth v],
HW [auth A2],
HX [auth A6],
HZ [auth BG],
ID [auth 6],
IDA [auth 1],
IE [auth 7],
IEA [auth BD],
IF [auth B],
IFA [auth BU],
IJ [auth Y],
IR [auth 9],
IS [auth 0],
IT [auth AB],
IU [auth v],
IX [auth A6],
IZ [auth BG],
JBA [auth BV],
JCA [auth Ba],
JDA [auth 1],
JE [auth 7],
JF [auth B],
JFA [auth BU],
JG [auth G],
JS [auth 0],
JT [auth AB],
JU [auth v],
JX [auth A6],
KBA [auth BV],
KCA [auth Ba],
KDA [auth 1],
KE [auth 7],
KF [auth B],
KFA [auth BU],
KG [auth G],
KI [auth S],
KP [auth a],
KS [auth 0],
KT [auth AB],
KU [auth v],
KY [auth BE],
LBA [auth BV],
LCA [auth Ba],
LDA [auth 1],
LF [auth B],
LG [auth G],
LH [auth N],
LI [auth S],
LK [auth d],
LP [auth a],
LS [auth 0],
LV [auth Au],
LY [auth BE],
MCA [auth Ba],
MDA [auth 1],
MF [auth B],
MH [auth N],
MI [auth S],
MK [auth d],
MO [auth C],
MP [auth a],
MV [auth Au],
MY [auth BE],
NC [auth 5],
NCA [auth Ba],
NDA [auth 1],
NEA [auth BF],
NF [auth B],
NH [auth N],
NI [auth S],
NM [auth s],
NN [auth y],
NO [auth C],
NQ [auth r],
NV [auth Au],
NW [auth A2],
NY [auth BE],
OC [auth 5],
OD [auth 6],
ODA [auth 1],
OEA [auth BF],
OF [auth B],
OFA [auth BU],
OI [auth S],
OJ [auth b],
OM [auth s],
ON [auth y],
OO [auth C],
OQ [auth r],
OR [auth 9],
OV [auth Au],
OW [auth A2],
OY [auth BE],
PBA [auth BV],
PC [auth 5],
PD [auth 6],
PDA [auth 1],
PE [auth 8],
PEA [auth BF],
PF [auth B],
PFA [auth BU],
PI [auth S],
PJ [auth b],
PM [auth s],
PN [auth y],
PO [auth C],
PP [auth a],
PQ [auth r],
PR [auth 9],
PT [auth AB],
PV [auth Au],
PW [auth A2],
PY [auth BE],
QAA [auth BQ],
QBA [auth BV],
QD [auth 6],
QDA [auth 1],
QE [auth 8],
QEA [auth BF],
QF [auth B],
QFA [auth BU],
QJ [auth b],
QN [auth y],
QO [auth C],
QQ [auth r],
QR [auth 9],
QT [auth AB],
QW [auth A2],
QY [auth BE],
RAA [auth BQ],
RBA [auth BV],
RD [auth 6],
RE [auth 8],
REA [auth BF],
RF [auth B],
RFA [auth BU],
RG [auth G],
RJ [auth b],
RN [auth y],
RO [auth C],
RR [auth 9],
RS [auth AA],
RT [auth AB],
RW [auth A2],
RX [auth BB],
RY [auth BE],
RZ [auth BJ],
SAA [auth BQ],
SBA [auth BV],
SD [auth 6],
SEA [auth BF],
SFA [auth BU],
SG [auth G],
SJ [auth b],
SO [auth C],
SR [auth 9],
SS [auth AA],
SX [auth BB],
SY [auth BE],
SZ [auth BJ],
TBA [auth BV],
TEA [auth BF],
TG [auth G],
TH [auth N],
TJ [auth b],
TM [auth s],
TO [auth C],
TS [auth AA],
TU [auth 2],
TX [auth BB],
TY [auth BE],
TZ [auth BJ],
UBA [auth BV],
UEA [auth BF],
UFA [auth BU],
UG [auth G],
UH [auth N],
UJ [auth b],
UL [auth n],
UM [auth s],
UO [auth C],
UP [auth c],
UQ [auth r],
UU [auth 2],
UY [auth BE],
VC [auth 5],
VEA [auth BF],
VG [auth G],
VH [auth N],
VJ [auth b],
VK [auth g],
VL [auth n],
VM [auth s],
VO [auth C],
VP [auth c],
VQ [auth r],
VT [auth v],
VY [auth BE],
WC [auth 5],
WCA [auth R],
WE [auth 8],
WEA [auth BF],
WH [auth N],
WI [auth Y],
WJ [auth b],
WK [auth g],
WL [auth n],
WM [auth s],
WO [auth C],
WP [auth c],
WQ [auth r],
WT [auth v],
WY [auth BE],
XC [auth 5],
XCA [auth R],
XE [auth 8],
XEA [auth BF],
XH [auth N],
XI [auth Y],
XJ [auth b],
XK [auth g],
XM [auth s],
XO [auth C],
XP [auth c],
XQ [auth r],
XT [auth v],
XY [auth BE],
YAA [auth BQ],
YC [auth 5],
YCA [auth R],
YD [auth 7],
YE [auth 8],
YEA [auth BF],
YI [auth Y],
YJ [auth b],
YM [auth s],
YP [auth c],
YQ [auth r],
YT [auth v],
YV [auth Aw],
YW [auth A6],
YY [auth BE],
ZAA [auth BQ],
ZC [auth 5],
ZD [auth 7],
ZEA [auth BF],
ZJ [auth b],
ZP [auth c],
ZR [auth 0],
ZS [auth AA],
ZT [auth v],
ZW [auth A6],
ZX [auth BB],
ZY [auth BE],
ZZ [auth BJ]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
PHO

Query on PHO


Download:Ideal Coordinates CCD File
ADA [auth R]
FO [auth A]
GEA [auth BD]
GO [auth A]
HEA [auth BD]
ADA [auth R],
FO [auth A],
GEA [auth BD],
GO [auth A],
HEA [auth BD],
NP [auth a],
OP [auth a],
ZCA [auth R]
PHEOPHYTIN A
C55 H74 N4 O5
CQIKWXUXPNUNDV-RCBXBCQGSA-N
SQD

Query on SQD


Download:Ideal Coordinates CCD File
BW [auth Az]
DDA [auth R]
DW [auth A1]
FG [auth D]
HH [auth L]
BW [auth Az],
DDA [auth R],
DW [auth A1],
FG [auth D],
HH [auth L],
JH [auth L],
KEA [auth BD],
KO [auth A],
MZ [auth BG],
NAA [auth BO],
OAA [auth BO],
QK [auth d],
RL [auth l],
RP [auth a],
SL [auth l],
ZU [auth 2]
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG

Query on LMG


Download:Ideal Coordinates CCD File
DH [auth I]
DP [auth C]
DZ [auth BE]
EDA [auth 1]
EFA [auth BF]
DH [auth I],
DP [auth C],
DZ [auth BE],
EDA [auth 1],
EFA [auth BF],
EG [auth D],
HK [auth b],
JO [auth A],
KQ [auth c],
LAA [auth BL],
LO [auth C],
LZ [auth BG],
MEA [auth BF],
NX [auth A0],
OU [auth v],
PK [auth d],
PL [auth i],
RU [auth v],
TP [auth c],
VF [auth B],
WDA [auth 1],
XV [auth Aw],
YU [auth 2],
ZF [auth B]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
PL9

Query on PL9


Download:Ideal Coordinates CCD File
CG [auth D],
JZ [auth BG],
NK [auth d],
VU [auth 2]		2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
C53 H80 O2
FKUYMLZIRPABFK-UHFFFAOYSA-N
LHG

Query on LHG


Download:Ideal Coordinates CCD File
BI [auth N]
CN [auth w]
CW [auth Az]
DD [auth 5]
DG [auth D]
BI [auth N],
CN [auth w],
CW [auth Az],
DD [auth 5],
DG [auth D],
EP [auth C],
ER [auth r],
EZ [auth BE],
FFA [auth BF],
FP [auth C],
FZ [auth BE],
GBA [auth BQ],
GFA [auth BF],
GZ [auth BE],
HAA [auth BJ],
HY [auth BB],
IH [auth L],
IK [auth b],
JK [auth b],
KK [auth b],
KM [auth n],
KZ [auth BG],
LL [auth g],
LQ [auth c],
MJ [auth Y],
MQ [auth c],
OK [auth d],
OS [auth 0],
OX [auth A0],
PU [auth v],
RCA [auth Ba],
TI [auth W],
TV [auth Au],
VD [auth 6],
VN [auth y],
VW [auth A2],
WF [auth B],
WR [auth 9],
WU [auth 2],
XDA [auth 1],
XF [auth B],
XFA [auth BU],
XU [auth 2],
YBA [auth BY],
YDA [auth 1],
ZG [auth G]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
HEM

Query on HEM


Download:Ideal Coordinates CCD File
BV [auth 4],
HG [auth F],
PZ [auth BI],
TK [auth f]		PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
NEX

Query on NEX


Download:Ideal Coordinates CCD File
AI [auth N]
BN [auth s]
CD [auth 5]
DR [auth r]
FBA [auth BQ]
AI [auth N],
BN [auth s],
CD [auth 5],
DR [auth r],
FBA [auth BQ],
GAA [auth BJ],
GY [auth BB],
HT [auth AA],
IY [auth BB],
JM [auth n],
KL [auth g],
LJ [auth Y],
MX [auth A6],
OE [auth 7],
QCA [auth Ba],
SI [auth S],
SV [auth Au],
UN [auth y],
UW [auth A2],
VR [auth 9],
XBA [auth BV],
YG [auth G]
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
C40 H56 O4
PGYAYSRVSAJXTE-OQASCVKESA-N
XAT

Query on XAT


Download:Ideal Coordinates CCD File
AF [auth 8]
AH [auth G]
CI [auth N]
CR [auth r]
DN [auth y]
AF [auth 8],
AH [auth G],
CI [auth N],
CR [auth r],
DN [auth y],
ED [auth 5],
GT [auth AA],
HBA [auth BQ],
IAA [auth BJ],
LM [auth n],
ML [auth g],
NE [auth 7],
PS [auth AA],
PX [auth BB],
TT [auth AB],
UI [auth Y],
UV [auth Au],
WD [auth 7],
WFA [auth BU],
WW [auth A2],
XR [auth 9],
ZBA [auth Ba]
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O4
SZCBXWMUOPQSOX-WVJDLNGLSA-N
LUT

Query on LUT


Download:Ideal Coordinates CCD File
AD [auth 5]
AN [auth s]
BD [auth 5]
BR [auth r]
DBA [auth BQ]
AD [auth 5],
AN [auth s],
BD [auth 5],
BR [auth r],
DBA [auth BQ],
EAA [auth BJ],
EBA [auth BQ],
ET [auth AA],
EY [auth BB],
FAA [auth BJ],
FT [auth AA],
FY [auth BB],
HM [auth n],
IL [auth g],
IM [auth n],
JJ [auth Y],
JL [auth g],
KJ [auth Y],
KX [auth A6],
LE [auth 7],
LX [auth A6],
ME [auth 7],
MS [auth 0],
NS [auth 0],
OCA [auth Ba],
PCA [auth Ba],
QI [auth S],
QV [auth Au],
RI [auth S],
RV [auth Au],
SN [auth y],
ST [auth AB],
SW [auth A2],
TD [auth 6],
TN [auth y],
TR [auth 9],
TW [auth A2],
UD [auth 6],
UR [auth 9],
VBA [auth BV],
VFA [auth BU],
WBA [auth BV],
WG [auth G],
XG [auth G],
YH [auth N],
ZE [auth 8],
ZH [auth N],
ZM [auth s]
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O2
KBPHJBAIARWVSC-NSIPBSJQSA-N
BCR
(Subject of Investigation/LOI)

Query on BCR


Download:Ideal Coordinates CCD File
AFA [auth BF]
AV [auth 4]
AW [auth Ay]
AZ [auth BE]
BF [auth 8]
AFA [auth BF],
AV [auth 4],
AW [auth Ay],
AZ [auth BE],
BF [auth 8],
BFA [auth BF],
BH [auth H],
BZ [auth BE],
CDA [auth R],
CZ [auth BE],
EK [auth b],
FH [auth K],
FK [auth b],
GG [auth F],
GH [auth K],
GK [auth b],
HQ [auth c],
IO [auth A],
JAA [auth BK],
JEA [auth BD],
JY [auth BE],
LU [auth v],
MAA [auth BN],
MU [auth v],
NJ [auth b],
NL [auth h],
NU [auth v],
OZ [auth BI],
QL [auth k],
QP [auth a],
QU [auth v],
RDA [auth 1],
SCA [auth Bb],
SDA [auth 1],
SF [auth B],
SK [auth f],
TF [auth B],
UF [auth B],
UT [auth AB],
VV [auth Av],
WN [auth z],
XN [auth z],
YF [auth B],
YO [auth C],
ZO [auth C],
ZV [auth Ay]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
OEX

Query on OEX


Download:Ideal Coordinates CCD File
AO [auth A],
BEA [auth BD],
IP [auth a],
UCA [auth R]		CA-MN4-O5 CLUSTER
Ca Mn4 O5
SEXWDHMBWJEXOJ-UHFFFAOYSA-N
BCT

Query on BCT


Download:Ideal Coordinates CCD File
AEA [auth BD],
HP [auth a],
SU [auth 2],
YN [auth A]		BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
FE2

Query on FE2


Download:Ideal Coordinates CCD File
BO [auth A],
CEA [auth BD],
JP [auth a],
VCA [auth R]		FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-08
    Type: Initial release