9C7U

Structure of the human truncated BOS complex in GDN

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 
  • Membrane Protein: Yes  PDBTM

  • Deposited: 2024-06-11 Released: 2024-08-21 
  • Deposition Author(s): Nguyen, V.N., Tomaleri, G.P., Voorhees, R.M.
  • Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Heritage Medical Research Institute

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Role of a holo-insertase complex in the biogenesis of biophysically diverse ER membrane proteins.

Page, K.R.Nguyen, V.N.Pleiner, T.Tomaleri, G.P.Wang, M.L.Guna, A.Hazu, M.Wang, T.Y.Chou, T.F.Voorhees, R.M.

(2024) Mol Cell 

  • DOI: https://doi.org/10.1016/j.molcel.2024.08.005
  • Primary Citation of Related Structures:  
    9C7U, 9C7V

  • PubMed Abstract: 

    Mammalian membrane proteins perform essential physiologic functions that rely on their accurate insertion and folding at the endoplasmic reticulum (ER). Using forward and arrayed genetic screens, we systematically studied the biogenesis of a panel of membrane proteins, including several G-protein-coupled receptors (GPCRs). We observed a central role for the insertase, the ER membrane protein complex (EMC), and developed a dual-guide approach to identify genetic modifiers of the EMC. We found that the back of Sec61 (BOS) complex, a component of the multipass translocon, was a physical and genetic interactor of the EMC. Functional and structural analysis of the EMC⋅BOS holocomplex showed that characteristics of a GPCR's soluble domain determine its biogenesis pathway. In contrast to prevailing models, no single insertase handles all substrates. We instead propose a unifying model for coordination between the EMC, the multipass translocon, and Sec61 for the biogenesis of diverse membrane proteins in human cells.


  • Organizational Affiliation

    Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Ave., Pasadena, CA 91125, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nicalin563Homo sapiensMutation(s): 0 
Gene Names: NCLN
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q969V3 (Homo sapiens)
Explore Q969V3 
Go to UniProtKB:  Q969V3
PHAROS:  Q969V3
GTEx:  ENSG00000125912 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ969V3
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q969V3-1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
BOS complex subunit NOMO2386Homo sapiensMutation(s): 0 
Gene Names: NOMO2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q5JPE7 (Homo sapiens)
Explore Q5JPE7 
Go to UniProtKB:  Q5JPE7
GTEx:  ENSG00000185164 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5JPE7
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Transmembrane protein 147224Homo sapiensMutation(s): 0 
Gene Names: TMEM147
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BVK8 (Homo sapiens)
Explore Q9BVK8 
Go to UniProtKB:  Q9BVK8
PHAROS:  Q9BVK8
GTEx:  ENSG00000105677 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BVK8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
D [auth A]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.3
MODEL REFINEMENTPHENIX1.20.1-4487

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesDP2 GM137412
Heritage Medical Research InstituteUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references