Annotations: 9C7U

Structure of the human truncated BOS complex in GDN

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF09767	Predicted membrane protein (DUF2053) (DUF2053)	Predicted membrane protein (DUF2053)	-	Family
B	PF23192	NOMO C-terminal transthyretin-like domain (NOMO_12th)	NOMO C-terminal transthyretin-like domain	This domain is found C-terminal in the family of human Nodal modulators NOMO1, NOMO2, NOMO3 and in other related proteins. The Nodal modulators are components of the multi-pass translocon (MPT) complex that mediates insertion of multi-pass membrane p ...	This domain is found C-terminal in the family of human Nodal modulators NOMO1, NOMO2, NOMO3 and in other related proteins. The Nodal modulators are components of the multi-pass translocon (MPT) complex that mediates insertion of multi-pass membrane proteins into the membrane lipid bilayer [1,2]. They play important role in the protein topogenesis and cells lacking these components show reduced multipass protein stability [1]. The domain represented by this entry has a weak sequence similarity to Transthyretin-like domains and it is predicted to adopt similar structure that consists of seven-stranded beta-sandwich.	Domain
A	PF04389	Peptidase family M28 (Peptidase_M28)	Peptidase family M28		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Transmembrane protein 147	ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope localization protein localization to organelle macromolecule localization cellular process intracellular protein localization protein localization to nuclear inner membrane membrane organization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope localization protein localization to organelle macromolecule localization cellular process intracellular protein localization protein localization to nuclear inner membrane membrane organization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization organelle organization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle nuclear membrane nucleus intracellular membrane-bounded organelle cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
B	BOS complex subunit NOMO2	binding carbohydrate binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding	membrane organization establishment of protein localization cellular localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process membrane organization establishment of protein localization cellular localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	protein-containing complex cellular anatomical structure intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
A	Nicalin	ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	cellular response to stimulus activin receptor signaling pathway cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process response to stimulus signaling negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication nodal signaling pathway negative regulation of activin receptor signaling pathway negative regulation of cellular process cellular response to stimulus activin receptor signaling pathway cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process response to stimulus signaling negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication nodal signaling pathway negative regulation of activin receptor signaling pathway negative regulation of cellular process signal transduction enzyme-linked receptor protein signaling pathway regulation of biological process regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction negative regulation of nodal signaling pathway regulation of nodal signaling pathway regulation of response to stimulus regulation of cell communication cellular process transforming growth factor beta receptor superfamily signaling pathway regulation of activin receptor signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of cellular component organization protein-containing complex organization regulation of cellular component biogenesis cellular component biogenesis cellular component organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis regulation of protein stability regulation of biological quality protein stabilization regulation of protein complex stability developmental process multicellular organismal process lateral mesoderm development animal organ development pattern specification process mesenchyme development tissue development regionalization determination of left/right asymmetry in lateral mesoderm multicellular organism development determination of bilateral symmetry anatomical structure development animal gross anatomical part developmental process determination of left/right symmetry left/right pattern formation mesoderm development specification of symmetry membrane organization establishment of protein localization cellular localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization localization organelle organization protein localization to organelle macromolecule localization intracellular protein localization protein insertion into membrane protein insertion into ER membrane endomembrane system organization	cellular anatomical structure membrane protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure membrane protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR019164	Transmembrane protein 147	Family
B	IPR013784	Carbohydrate-binding-like fold	Homologous Superfamily
B	IPR056187	NOMO, eighth prealbumin-like domain	Domain
B	IPR056190	NOMO, fifth transthyretin-like domain	Domain
B	IPR056191	NOMO, C-terminal transthyretin-like domain	Domain
B	IPR056319	NOMO, seventh transthyretin-like domain	Domain
B	IPR008969	Carboxypeptidase-like, regulatory domain superfamily	Homologous Superfamily
B	IPR055075	NOMO-like, N-terminal beta-sandwich domain	Domain
B	IPR056189	NOMO, third transthyretin-like domain	Domain
B	IPR055073	NOMO-like, ninth beta-sandwich domain	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR051417	Serine-Aspartate Repeat-Containing	Family
B	IPR041033	SpaA-like, prealbumin fold domain subgroup 1	Domain
A	IPR007484	Peptidase M28	Domain
A	IPR016574	Nicalin	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C	MemProtMD	Annotated as membrane protein by MemProtMD

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.