9AVA

Co-crystal structure of human TREX1 in complex with an inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.204 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Co-crystal structure of human TREX1 in complex with an inhibitor

Dehghani-Tafti, S.Dong, A.Li, Y.Xu, J.Ackloo, S.Arrowsmith, C.H.Edwards, A.M.Halabelian, L.Structural Genomics Consortium (SGC)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Three-prime repair exonuclease 1
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
231Homo sapiensMutation(s): 0 
Gene Names: TREX1
EC: 3.1.11.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NSU2 (Homo sapiens)
Explore Q9NSU2 
Go to UniProtKB:  Q9NSU2
PHAROS:  Q9NSU2
GTEx:  ENSG00000213689 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NSU2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1AG1 (Subject of Investigation/LOI)
Query on A1AG1

Download Ideal Coordinates CCD File 
BB [auth I]
DA [auth D]
FB [auth J]
HA [auth E]
IB [auth K]
BB [auth I],
DA [auth D],
FB [auth J],
HA [auth E],
IB [auth K],
KB [auth L],
MA [auth F],
N [auth A],
S [auth B],
SA [auth G],
X [auth C],
XA [auth H]
(2R)-2-[(5R,6S,8R,9aS)-8-amino-1-oxo-5-(2-phenylethyl)hexahydro-1H-pyrrolo[1,2-a][1,4]diazepin-2(3H)-yl]-N-[(3,4-dichlorophenyl)methyl]-4-methylpentanamide
C29 H38 Cl2 N4 O2
OUNCNWBQPZONLJ-CIMSBJEKSA-N
K
Query on K

Download Ideal Coordinates CCD File 
AB [auth I]
CA [auth D]
EB [auth J]
HB [auth K]
JB [auth L]
AB [auth I],
CA [auth D],
EB [auth J],
HB [auth K],
JB [auth L],
LA [auth F],
M [auth A],
R [auth B],
RA [auth G],
W [auth C],
WA [auth H]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
UNX
Query on UNX

Download Ideal Coordinates CCD File 
AA [auth C]
BA [auth C]
CB [auth I]
DB [auth I]
EA [auth D]
AA [auth C],
BA [auth C],
CB [auth I],
DB [auth I],
EA [auth D],
FA [auth D],
GA [auth D],
GB [auth J],
IA [auth E],
JA [auth E],
KA [auth E],
LB [auth L],
NA [auth F],
O [auth A],
OA [auth F],
P [auth A],
PA [auth F],
Q [auth A],
QA [auth F],
T [auth B],
TA [auth G],
U [auth B],
UA [auth G],
V [auth B],
VA [auth G],
Y [auth C],
YA [auth H],
Z [auth C],
ZA [auth H]
UNKNOWN ATOM OR ION
X
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.204 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 136.12α = 90
b = 288.96β = 90
c = 178.84γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
HKL-3000data scaling
HKL-3000data reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-15
    Type: Initial release