Cryo-EM structure of cryptophyte photosystem II
Li, K., Zhao, L.S., Zhang, Y.Z., Liu, L.N.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein D1 | A [auth a], B [auth A] | 360 | Chroomonas placoidea | Mutation(s): 0  EC: 1.10.3.9 Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI41 (Chroomonas placoidea) Explore A0A222AI41  Go to UniProtKB:  A0A222AI41 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI41 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ACPII-4 | C [auth 0], G [auth 4] | 219 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ACPII-1 | D [auth 1], J [auth 7] | 218 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ACPII-2 | E [auth 2], K [auth 8] | 200 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ACPII-3 | F [auth 3], L [auth 9] | 229 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ACPII-5 | H [auth 5], MA [auth g] | 216 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ACPII-6 | I [auth 6], VA [auth p] | 234 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP47 reaction center protein | HA [auth b], M [auth B] | 509 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AIE3 (Chroomonas placoidea) Explore A0A222AIE3  Go to UniProtKB:  A0A222AIE3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AIE3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsbC_CP43 | IA [auth c], N [auth C] | 473 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II D2 protein | JA [auth d], O [auth D] | 351 | Chroomonas placoidea | Mutation(s): 0  EC: 1.10.3.9 Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI37 (Chroomonas placoidea) Explore A0A222AI37  Go to UniProtKB:  A0A222AI37 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI37 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit alpha | KA [auth e], P [auth E] | 84 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI74 (Chroomonas placoidea) Explore A0A222AI74  Go to UniProtKB:  A0A222AI74 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI74 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit beta | LA [auth f], Q [auth F] | 42 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI51 (Chroomonas placoidea) Explore A0A222AI51  Go to UniProtKB:  A0A222AI51 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI51 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein H | NA [auth h], R [auth H] | 67 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AIE4 (Chroomonas placoidea) Explore A0A222AIE4  Go to UniProtKB:  A0A222AIE4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AIE4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein I | OA [auth i], S [auth I] | 38 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI80 (Chroomonas placoidea) Explore A0A222AI80  Go to UniProtKB:  A0A222AI80 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI80 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein J | PA [auth j], T [auth J] | 39 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI54 (Chroomonas placoidea) Explore A0A222AI54  Go to UniProtKB:  A0A222AI54 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI54 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein K | QA [auth k], U [auth K] | 45 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AIA0 (Chroomonas placoidea) Explore A0A222AIA0  Go to UniProtKB:  A0A222AIA0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AIA0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein L | RA [auth l], V [auth L] | 38 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI58 (Chroomonas placoidea) Explore A0A222AI58  Go to UniProtKB:  A0A222AI58 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI58 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsbM | SA [auth m], W [auth M] | 37 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Psb-gama_linker | TA [auth n], X [auth N] | 297 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsbO | UA [auth o], Y [auth O] | 300 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsbQ | WA [auth q], Z [auth Q] | 144 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein T | AA [auth T], XA [auth t] | 32 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AID2 (Chroomonas placoidea) Explore A0A222AID2  Go to UniProtKB:  A0A222AID2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AID2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsbU | BA [auth U], YA [auth u] | 121 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II cytochrome c550 | CA [auth V], ZA [auth v] | 163 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI35 (Chroomonas placoidea) Explore A0A222AI35  Go to UniProtKB:  A0A222AI35 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI35 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PsbW | AB [auth w], DA [auth W] | 130 | Chroomonas placoidea | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein X | BB [auth x], EA [auth X] | 39 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI61 (Chroomonas placoidea) Explore A0A222AI61  Go to UniProtKB:  A0A222AI61 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI61 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein Psb30 | CB [auth y], FA [auth Y] | 34 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI69 (Chroomonas placoidea) Explore A0A222AI69  Go to UniProtKB:  A0A222AI69 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI69 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein Z | DB [auth z], GA [auth Z] | 62 | Chroomonas placoidea | Mutation(s): 0  Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for A0A222AI96 (Chroomonas placoidea) Explore A0A222AI96  Go to UniProtKB:  A0A222AI96 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A222AI96 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 16 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | BL [auth H] FN [auth c] GN [auth c] IN [auth c] LO [auth h] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CLA (Subject of Investigation/LOI) Query on CLA | AD [auth 1] AF [auth 4] AH [auth 7] AJ [auth B] AK [auth C] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
PHO Query on PHO | KB [auth a], LN [auth d], SK [auth D], WB [auth A] | PHEOPHYTIN A C55 H74 N4 O5 CQIKWXUXPNUNDV-RCBXBCQGSA-N | |||
SQD Query on SQD | DL [auth J] EL [auth L] NO [auth j] OM [auth c] OO [auth l] | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL C41 H78 O12 S RVUUQPKXGDTQPG-JUDHQOGESA-N | |||
LMG Query on LMG | HN [auth c] LM [auth b] ML [auth T] NM [auth b] OK [auth C] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
PL9 Query on PL9 | NB [auth a], PN [auth d], WK [auth D], ZB [auth A] | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE C53 H80 O2 FKUYMLZIRPABFK-UHFFFAOYSA-N | |||
LHG Query on LHG | AC [auth A] AE [auth 3] AG [auth 5] AI [auth 8] CI [auth 9] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
HEM Query on HEM | AL [auth F], NL [auth V], RP [auth v], TN [auth f] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
KC2 (Subject of Investigation/LOI) Query on KC2 | CD [auth 1] CO [auth g] DD [auth 1] EH [auth 7] FH [auth 7] | Chlorophyll c2 C35 H28 Mg N4 O5 QDRBYWCRXZZVLY-QIEHNWLWSA-L | |||
II0 Query on II0 | BI [auth 9] CG [auth 6] FD [auth 1] FO [auth g] GD [auth 1] | (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol C40 H52 O2 DVICWXUADSCSLL-DDEWRDOISA-N | |||
IHT Query on IHT | IO [auth g] OP [auth p] SE [auth 3] TG [auth 6] UI [auth 9] | (1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol C40 H54 O UNJKJDIRJWIHLL-BQLQDKTLSA-N | |||
8CT Query on 8CT | CL [auth H] CN [auth c] DN [auth c] ED [auth 1] EN [auth c] | (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene C40 H56 ANVAOWXLWRTKGA-GZSHKXEASA-N | |||
OEX Query on OEX | EB [auth a], QB [auth A] | CA-MN4-O5 CLUSTER Ca Mn4 O5 SEXWDHMBWJEXOJ-UHFFFAOYSA-N | |||
BCT Query on BCT | GB [auth a], SB [auth A] | BICARBONATE ION C H O3 BVKZGUZCCUSVTD-UHFFFAOYSA-M | |||
FE2 Query on FE2 | FB [auth a], RB [auth A] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N | |||
CL Query on CL | HB [auth a], TB [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Funding Organization | Location | Grant Number |
---|---|---|
National Science Foundation (NSF, China) | China | -- |