8XR6

Cryo-EM structure of cryptophyte photosystem II

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth a],
B [auth A]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
JA [auth d],
O [auth D]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
KA [auth e],
P [auth E]		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
NA [auth h],
R [auth H]		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
OA [auth i],
S [auth I]		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
RA [auth l],
V [auth L]		PF02419PsbL protein (PsbL)PsbL protein- Family
AA [auth T],
XA [auth t]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
CA [auth V],
ZA [auth v]		PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
BB [auth x],
EA [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
CB [auth y],
FA [auth Y]		PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
DB [auth z],
GA [auth Z]		PF01737YCF9 (Ycf9)YCF9- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a],
B [auth A]		Photosystem II protein D1
JA [auth d],
O [auth D]		Photosystem II D2 protein
KA [auth e],
P [auth E]		Cytochrome b559 subunit alpha
LA [auth f],
Q [auth F]		Cytochrome b559 subunit beta
NA [auth h],
R [auth H]		Photosystem II reaction center protein H
OA [auth i],
S [auth I]		Photosystem II reaction center protein I-
PA [auth j],
T [auth J]		Photosystem II reaction center protein J-
QA [auth k],
U [auth K]		Photosystem II reaction center protein K-
RA [auth l],
V [auth L]		Photosystem II reaction center protein L-
SA [auth m],
W [auth M]		PsbM---
TA [auth n],
X [auth N]		Psb-gama_linker---
C [auth 0],
G [auth 4]		ACPII-4---
UA [auth o],
Y [auth O]		PsbO---
WA [auth q],
Z [auth Q]		PsbQ---
AA [auth T],
XA [auth t]		Photosystem II reaction center protein T-
BA [auth U],
YA [auth u]		PsbU---
CA [auth V],
ZA [auth v]		Photosystem II cytochrome c550
AB [auth w],
DA [auth W]		PsbW---
BB [auth x],
EA [auth X]		Photosystem II reaction center protein X-
CB [auth y],
FA [auth Y]		Photosystem II reaction center protein Psb30-
DB [auth z],
GA [auth Z]		Photosystem II reaction center protein Z-
D [auth 1],
J [auth 7]		ACPII-1---
E [auth 2],
K [auth 8]		ACPII-2---
F [auth 3],
L [auth 9]		ACPII-3---
H [auth 5],
MA [auth g]		ACPII-5---
I [auth 6],
VA [auth p]		ACPII-6---
HA [auth b],
M [auth B]		Photosystem II CP47 reaction center protein
IA [auth c],
N [auth C]		PsbC_CP43---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth a],
B [auth A]		IPR005867Photosystem II protein D1Family
A [auth a],
B [auth A]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth a],
B [auth A]		IPR000484Photosynthetic reaction centre, L/MFamily
JA [auth d],
O [auth D]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
JA [auth d],
O [auth D]		IPR000484Photosynthetic reaction centre, L/MFamily
JA [auth d],
O [auth D]		IPR005868Photosystem II D2 proteinFamily
KA [auth e],
P [auth E]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
KA [auth e],
P [auth E]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
KA [auth e],
P [auth E]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
KA [auth e],
P [auth E]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
KA [auth e],
P [auth E]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
LA [auth f],
Q [auth F]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
LA [auth f],
Q [auth F]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
LA [auth f],
Q [auth F]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
NA [auth h],
R [auth H]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
NA [auth h],
R [auth H]		IPR001056Photosystem II reaction centre protein HFamily
OA [auth i],
S [auth I]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
OA [auth i],
S [auth I]		IPR003686Photosystem II PsbIFamily
PA [auth j],
T [auth J]		IPR002682Photosystem II PsbJFamily
PA [auth j],
T [auth J]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
QA [auth k],
U [auth K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
QA [auth k],
U [auth K]		IPR003687Photosystem II PsbKFamily
RA [auth l],
V [auth L]		IPR003372Photosystem II PsbLFamily
RA [auth l],
V [auth L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
AA [auth T],
XA [auth t]		IPR001743Photosystem II PsbTFamily
AA [auth T],
XA [auth t]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
CA [auth V],
ZA [auth v]		IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
CA [auth V],
ZA [auth v]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
CA [auth V],
ZA [auth v]		IPR009056Cytochrome c-like domainDomain
CA [auth V],
ZA [auth v]		IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
CA [auth V],
ZA [auth v]		IPR029490Cytochrome c-550 domainDomain
BB [auth x],
EA [auth X]		IPR009518Photosystem II PsbXFamily
BB [auth x],
EA [auth X]		IPR023431Photosystem II PsbX, type 1 subfamilyFamily
CB [auth y],
FA [auth Y]		IPR010284Photosystem II reaction center protein Ycf12Family
DB [auth z],
GA [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
DB [auth z],
GA [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
HA [auth b],
M [auth B]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
HA [auth b],
M [auth B]		IPR000932Photosystem antenna protein-likeFamily
HA [auth b],
M [auth B]		IPR017486Photosystem II CP47 reaction centre proteinFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM