8QTZ

Cryo-EM reconstruction of VP5*/VP8* assembly from SA11 Rotavirus Tripsinized Triple Layered Particle

• PDB DOI: https://doi.org/10.2210/pdb8QTZ/pdb
• EM Map EMD-18655: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Rotavirus
• Expression System: Chlorocebus aethiops
• Mutation(s): No 


• Deposited: 2023-10-13 Released: 2024-09-25 
• Deposition Author(s): Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.
• Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.27 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural basis of rotavirus spike proteolytic activation

Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A2B1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 260.25 kDa 
• Atom Count: 16,260 
• Modelled Residue Count: 2,067 
• Deposited Residue Count: 2,328 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer capsid protein VP4	A [auth X], B [auth Y], C [auth Z]	776	Rotavirus	Mutation(s): 0  Gene Names: VP4
UniProt
Find proteins for A0A060IEP4 (Rotavirus A) Explore A0A060IEP4  Go to UniProtKB:  A0A060IEP4

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.27 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-25 
Deposition Author(s): Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.

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Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	ISCIII-AESI PI20CIII/00014

Revision History  

• Version 1.0: 2024-09-25
  Type: Initial release