8OLE

Cryo-EM reconstruction of VP4 assembly from SA11 Rotavirus Non-Tripsinized Triple Layered Particle

PDB DOI: https://doi.org/10.2210/pdb8OLE/pdb
EM Map EMD-16956: EMDB EMDataResource

Classification: VIRUS
Organism(s): Rotavirus
Expression System: Chlorocebus aethiops
Mutation(s): No

Deposited: 2023-03-30 Released: 2024-09-25
Deposition Author(s): Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.
Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of rotavirus spike proteolytic activation

Asensio-Cob, D., Perez-Mata, C., Gomez-Blanco, J., Vargas, J., Rodriguez, J.M., Luque, D.

To be published.

Macromolecule Content

Total Structure Weight: 260.25 kDa
Atom Count: 17,757
Modelled Residue Count: 2,254
Deposited Residue Count: 2,328
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer capsid protein VP4	A [auth X], B [auth Y], C [auth Z]	776	Rotavirus	Mutation(s): 0 Gene Names: VP4
UniProt
Find proteins for A0A060IEP4 (Rotavirus A) Explore A0A060IEP4 Go to UniProtKB: A0A060IEP4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A060IEP4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-25

Deposition Author(s):

Asensio-Cob, D.

Gomez-Blanco, J.

Rodriguez, J.M.

Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	ISCIII-AESI PI20CIII/00014

Revision History (Full details and data files)

Version 1.0: 2024-09-25
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.